Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0885
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69384-2|CAD89746.1|  521|Caenorhabditis elegans Hypothetical pr...    87   2e-17
Z69384-1|CAA93416.1|  520|Caenorhabditis elegans Hypothetical pr...    87   2e-17
S68230-1|AAD14008.1|  514|Caenorhabditis elegans histidyl tRNA s...    87   2e-17
L13152-1|AAB38116.1|  525|Caenorhabditis elegans histidyl tRNA s...    87   2e-17
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    28   5.8  

>Z69384-2|CAD89746.1|  521|Caenorhabditis elegans Hypothetical
           protein T11G6.1b protein.
          Length = 521

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +2

Query: 458 RPTKVYS*NTKGNKRLQPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGE 637
           +P K      KG +   P Q  +RN+VL  +   F R+GAE IDTPVFEL+DVL GKYGE
Sbjct: 56  KPGKFVLKTGKGTRDYGPAQSALRNSVLQTVTETFNRYGAETIDTPVFELRDVLMGKYGE 115

Query: 638 D-SKLIYDLKDQGGEI 682
           +  KL+YDL+DQGGE+
Sbjct: 116 EGGKLVYDLQDQGGEL 131


>Z69384-1|CAA93416.1|  520|Caenorhabditis elegans Hypothetical
           protein T11G6.1a protein.
          Length = 520

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +2

Query: 458 RPTKVYS*NTKGNKRLQPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGE 637
           +P K      KG +   P Q  +RN+VL  +   F R+GAE IDTPVFEL+DVL GKYGE
Sbjct: 55  KPGKFVLKTGKGTRDYGPAQSALRNSVLQTVTETFNRYGAETIDTPVFELRDVLMGKYGE 114

Query: 638 D-SKLIYDLKDQGGEI 682
           +  KL+YDL+DQGGE+
Sbjct: 115 EGGKLVYDLQDQGGEL 130


>S68230-1|AAD14008.1|  514|Caenorhabditis elegans histidyl tRNA
           synthetase protein.
          Length = 514

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +2

Query: 458 RPTKVYS*NTKGNKRLQPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGE 637
           +P K      KG +   P Q  +RN+VL  +   F R+GAE IDTPVFEL+DVL GKYGE
Sbjct: 5   KPGKFVLKTGKGTRDYGPAQSALRNSVLQTVTETFNRYGAETIDTPVFELRDVLMGKYGE 64

Query: 638 D-SKLIYDLKDQGGEI 682
           +  KL+YDL+DQGGE+
Sbjct: 65  EGGKLVYDLQDQGGEL 80


>L13152-1|AAB38116.1|  525|Caenorhabditis elegans histidyl tRNA
           synthetase protein.
          Length = 525

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +2

Query: 458 RPTKVYS*NTKGNKRLQPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGE 637
           +P K      KG +   P Q  +RN+VL  +   F R+GAE IDTPVFEL+DVL GKYGE
Sbjct: 16  KPGKFVLKTGKGTRDYGPAQSALRNSVLQTVTETFNRYGAETIDTPVFELRDVLMGKYGE 75

Query: 638 D-SKLIYDLKDQGGEI 682
           +  KL+YDL+DQGGE+
Sbjct: 76  EGGKLVYDLQDQGGEL 91


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
           protein F26A3.3 protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 333 RLCNAVQRNCLTKNVTTSSCRKVKEEVSKLLALKAQLVTEDAGPQKFTLKTPKGTRDYNH 512
           R+C   QRN L   +TT   R+  + V K++    +++     P+  TL   +  R Y+H
Sbjct: 465 RICQTRQRNSLVNGLTTEEMREGYQRVRKIIFTPTRVIY--VAPE--TLMGNRVLRRYDH 520


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
           polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 333 RLCNAVQRNCLTKNVTTSSCRKVKEEVSKLLALKAQLVTEDAGPQKFTLKTPKGTRDYNH 512
           R+C   QRN L   +TT   R+  + V K++    +++     P+  TL   +  R Y+H
Sbjct: 465 RICQTRQRNSLVNGLTTEEMREGYQRVRKIIFTPTRVIY--VAPE--TLMGNRVLRRYDH 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,273,600
Number of Sequences: 27780
Number of extensions: 343451
Number of successful extensions: 741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)