Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0880
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    29   0.55 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   3.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   3.9  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   3.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   6.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   9.0  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   9.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.0  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 481 YNGRVIGSPDITLGVLRHFKLYFKYSRNPTRMSS 582
           Y  +++G P+++L  L HF   F Y RNP + ++
Sbjct: 613 YGEKILGKPNLSLHTLNHFLDKFAY-RNPKKSAA 645


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 18  SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 119
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 614 SVFYFPNNISLLLILVGFREYLKYNLKCLNTPSVMSGLPITLP 486
           S+   P N+SLL      R+   +    +N+ S +SG PITLP
Sbjct: 402 SLIQTPLNVSLL------RDETLFTAPVINSSSSLSGSPITLP 438


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 554  YLKYNLKCLNTPSVMSGLPITLPLYPQAMRLPEVSSVLDS 435
            +L  N+   +   V+  LP+  P  PQ +  P VS+V  S
Sbjct: 1162 WLSQNVVDESVTRVVKELPVPAPAAPQTLNPPSVSTVQQS 1201


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +2

Query: 221 LWENNKVYFKI*TLSVTNIWYWESVLTRTATTWPSEST--ASIVSEP-----SGTCS 370
           LW N+ VY+ + + S T        +T T+TT  +  T   S  S P     SGTC+
Sbjct: 737 LWANDAVYYPVSSSSTTTTSTSTGSVTTTSTTATASCTLPISYTSTPTTTSISGTCN 793


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 487 GRVIGSPDITLGVLRHFKLYFKYS 558
           GR++ + DIT+G L  F LY  Y+
Sbjct: 408 GRMVAAGDITVGQLSSFLLYTVYA 431


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 610 YFIFQIIFHCYSFWL 566
           YFI  +IF  YSFW+
Sbjct: 492 YFISALIFTSYSFWI 506


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = -1

Query: 578  LILVGFREYLKYNLKCLNTPSVMSGLP--ITLPLYPQAMRLP------EVSSVLDSVKAL 423
            LI +   + LKY+  CLN P V + +   I    +   ++LP      + S+VLD V  +
Sbjct: 1672 LINIEINKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRI 1731

Query: 422  LYSRL*M*NKLSLSYL 375
            + S + +  +L  S++
Sbjct: 1732 IQSYIDVSAELGYSHV 1747


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 26/95 (27%), Positives = 38/95 (40%)
 Frame = +1

Query: 253  LNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIYNREYSKAL 432
            ++T  +Q+L +G    P     AFGVNS+   +A  +  P     DN     N   +  L
Sbjct: 814  VDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV---IDNPL---NVRINAIL 867

Query: 433  TLSRTLETSGNRMAWGYNGRVIGSPDITLGVLRHF 537
               R+L+     M   Y  R  G P +      HF
Sbjct: 868  GKLRSLDKGSTIMPSLYLVRGDGDPQLRSWFFSHF 902


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 539 LKCLNTPSVMSGLPITLP-LYPQAMRLPEVSSVLDSVKAL 423
           LK +   S +S L ++   LYP++  L E+S + DS  A+
Sbjct: 276 LKDIKQSSELSDLSLSSQILYPESTTLSEISPIYDSELAI 315


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 118  ETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKL 8
            E V  +H L+  F ED+ E   E I  DV  A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 KTSPKVSWKFIALWENNK 238
           K SPKV+WK   +W + K
Sbjct: 28  KASPKVNWKTHIIWRSLK 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,720
Number of Sequences: 5004
Number of extensions: 52023
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)