Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0880
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)         30   1.3  
SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_47919| Best HMM Match : Uricase (HMM E-Value=8.2e-35)               28   7.2  
SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)                    27   9.5  
SB_5970| Best HMM Match : C2 (HMM E-Value=3.1e-08)                     27   9.5  
SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            27   9.5  
SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            27   9.5  

>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 110 DGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVY 244
           D L   L +  HG DG L F D ++ TS +++  F  +W+  + +
Sbjct: 127 DCLLYILFSPGHGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYH 171


>SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +2

Query: 218 ALWENNKVYFKI*TLSVTNIWYWESVLTRTAT-----TWPSESTASIV 346
           A+W  +  Y +  T++V  +WY  S  TR  T      W   ST  ++
Sbjct: 175 AVWYGHSTYTRCGTVTVHAVWYGHSTYTRYGTVTVHAVWCGHSTRGMI 222


>SB_47919| Best HMM Match : Uricase (HMM E-Value=8.2e-35)
          Length = 537

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 591 YFIATHSGWVS*IFKI*LK-MP*HPK-RNVGTSDHSTIVSPGHAVTRG 454
           YF+ TH      +FK   + +P H + R   T   +T + PGHA TRG
Sbjct: 284 YFLDTHKHVSMTLFKGATRILPGHAQTREYDTFKRATRILPGHAQTRG 331


>SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)
          Length = 668

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 566 GFREYLKYNLKCLNTPSVMSGLPITLPL-YPQAMRLPEVSSVLDSVKALL 420
           G   Y +  L C    +++ G+ I  P+ YP + R   VS VL   +A L
Sbjct: 281 GVLPYFQAFLSCFRCTTLLPGVLIVFPVYYPTSRRSYRVSGVLPYFQAFL 330



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 566 GFREYLKYNLKCLNTPSVMSGLPITLPL-YPQAMRLPEVSSVLDSVKALL 420
           G   Y +  L C    +++ G+ I  P+ YP + R   VS VL   +A L
Sbjct: 321 GVLPYFQAFLSCFRCTTLLPGVLIVFPVYYPTSRRSYRVSGVLPYFQAFL 370


>SB_5970| Best HMM Match : C2 (HMM E-Value=3.1e-08)
          Length = 288

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 359 HWALKLSTLLTPKAMWSP 306
           HW+  L+TL  P AMW P
Sbjct: 266 HWSHMLATLRKPVAMWHP 283


>SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 460

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 617 KSVFYFPNNISLLLILVGFREYLKYNLKCLNTPSVMSGLPITL 489
           K +   P N+S  +I+  F + +K++ +  N    + GLP++L
Sbjct: 342 KVLMKIPKNMSTSVIINNFMKQMKHSQEVKNRKFTLWGLPVSL 384


>SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 415

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 617 KSVFYFPNNISLLLILVGFREYLKYNLKCLNTPSVMSGLPITL 489
           K +   P N+S  +I+  F + +K++ +  N    + GLP++L
Sbjct: 297 KVLMKIPKNMSTSVIINNFMKQMKHSQEVKNRKFTLWGLPVSL 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,334,822
Number of Sequences: 59808
Number of extensions: 403804
Number of successful extensions: 1179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)