Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0880
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    30   1.6  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   2.1  
Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 412 REYSKALTLSRTLETSGNRMAWG--YNGRVIGSPDITLGVLRHF 537
           R+YS+ + L R  +T G R +W   +   V G+PD  L +  HF
Sbjct: 18  RDYSRQVQLERQADTEGRRSSWSPKHWFGVKGNPDDILKLPLHF 61


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 286  PIPNIGYAQCSDLEVDLVVLPQSNE-LPADFRACFVLTVAEGKS 158
            PIP +    C+    DL + P  N+ +P+ FR CF    A+GK+
Sbjct: 1463 PIPGVSGCCCN---TDLCLDPPKNKTVPSGFRKCFAGIYAQGKA 1503


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 286  PIPNIGYAQCSDLEVDLVVLPQSNE-LPADFRACFVLTVAEGKS 158
            PIP +    C+    DL + P  N+ +P+ FR CF    A+GK+
Sbjct: 1463 PIPGVSGCCCN---TDLCLDPPKNKTVPSGFRKCFAGIYAQGKA 1503


>Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical
           protein F44F1.3 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 103 VHKLNGVFGEDKSELNWETITDDVLGA-LEP 14
           VHK+NG+F ++K  +  E I D      LEP
Sbjct: 419 VHKINGIFSDNKKVVACEIINDSTQDIDLEP 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,181
Number of Sequences: 27780
Number of extensions: 289729
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)