Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0880
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.11 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.11 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -1

Query: 587  SLLLILVGFREYLKYNLKCLNTPSVMSGLPITLPLYPQAMRLP----EVSSVLDSVKALL 420
            +L  +L G R+Y  Y ++ L    V  G+P T+        +P    ++  V+ S +AL 
Sbjct: 1172 ALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALF 1231

Query: 419  YSRL 408
             S L
Sbjct: 1232 ISWL 1235


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -1

Query: 587  SLLLILVGFREYLKYNLKCLNTPSVMSGLPITLPLYPQAMRLP----EVSSVLDSVKALL 420
            +L  +L G R+Y  Y ++ L    V  G+P T+        +P    ++  V+ S +AL 
Sbjct: 1168 ALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALF 1227

Query: 419  YSRL 408
             S L
Sbjct: 1228 ISWL 1231


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 369 LQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVT 265
           L+ P+G+E+   V S G  +   +  D + Q+L+T
Sbjct: 38  LERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLIT 72


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 306 VRVSTDSQYQILVTLSVQIL 247
           + V+T ++   LVTLSVQ+L
Sbjct: 172 IAVNTTTEKGALVTLSVQLL 191


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +1

Query: 229 EQQGLLQDLNTERNQYLV---LGV-GTNPN 306
           +QQ L+Q L   ++QYL+   LG+ G NP+
Sbjct: 182 QQQRLIQQLQITQSQYLLQQGLGLQGHNPS 211


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 394 NCLCRI*RAAGTTGL 350
           NCL +I +A G TGL
Sbjct: 161 NCLTKIFKADGITGL 175


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 394 NCLCRI*RAAGTTGL 350
           NCL +I +A G TGL
Sbjct: 161 NCLTKIFKADGITGL 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,438
Number of Sequences: 438
Number of extensions: 3837
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)