Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0880
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 34 0.068
At4g24015.1 68417.m03451 zinc finger (RING-H2 type) protein-rela... 31 0.48
At4g39510.1 68417.m05587 cytochrome P450 family protein contains... 29 1.9
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 29 2.5
At3g17620.1 68416.m02251 F-box family protein contains Pfam prof... 29 2.5
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15... 29 2.5
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15... 29 2.5
At5g64820.1 68418.m08155 hypothetical protein 29 3.4
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 3.4
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 28 4.4
At2g35380.1 68415.m04337 peroxidase 20 (PER20) (P20) identical t... 28 5.9
At4g28590.1 68417.m04089 expressed protein 27 7.8
At2g42000.1 68415.m05195 plant EC metallothionein-like family 15... 27 7.8
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 34.3 bits (75), Expect = 0.068
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = -2
Query: 229 LPQSNELPADFRACFVLTVAEGKSAIVAV--------NIITQRQSETVALVHKLNGVFGE 74
L + +LP DF +C + ++ G A+ V N + Q +S+ A+ NG
Sbjct: 482 LSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQS 541
Query: 73 DKSELNWETITDDVLG 26
+SE + ET+T+ +LG
Sbjct: 542 GESEDSTETVTEAILG 557
>At4g24015.1 68417.m03451 zinc finger (RING-H2 type) protein-related
low similarity to RING-H2 zinc finger protein ATL4
[Arabidopsis thaliana] GI:4928399
Length = 174
Score = 31.5 bits (68), Expect = 0.48
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = -1
Query: 629 KEYQKSVFYFPNNISLLLILVGFREYLKYNLKCLNTPSVMSGLPITLPLYPQAMRLPEVS 450
K YQ +F P S++L L+ + YLK L++PS M LP++ + + LP V
Sbjct: 20 KLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMI-LPVS-SSHQTSSHLPSV- 76
Query: 449 SVLDSVKALLYSRL 408
+LD VK L +L
Sbjct: 77 CLLD-VKVELKDKL 89
>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 508
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 LTLSNDVHGNDGRLAFG-DGKDKTSPKVSWKFIALWENNKVYFKI 253
L S+D D LAF G+D TS +SW F L EN +V KI
Sbjct: 293 LNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 271 QYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIY 408
+YL + N F +NS+++FR +WY + D+D L I+
Sbjct: 344 EYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388
>At3g17620.1 68416.m02251 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 398
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 545 YNLKCLNTPSVMSGLPITLPLYPQAMRLPEVSSVLDSVKALLYSR 411
Y L C N S G + LP YP + +SSV + A+L+ R
Sbjct: 232 YFLLCFNFTSERFGPRLHLPCYPMDVDTVSLSSVREEQLAVLFQR 276
>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 84
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 487 HCIPRPCGYPRFQAS*TVSKPC-CIHGCRCRT 395
HC PC P+ Q T +K C C GC C T
Sbjct: 51 HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTCAT 81
>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 85
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 487 HCIPRPCGYPRFQAS*TVSKPC-CIHGCRCRT 395
HC PC P+ Q T +K C C GC C T
Sbjct: 52 HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTCAT 82
>At5g64820.1 68418.m08155 hypothetical protein
Length = 145
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 190 CFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETI 44
C ++ + G SA A + ++ E ++V ++G+FG +WE I
Sbjct: 15 CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI 63
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -2
Query: 244 VDLVVLPQSNELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKS 65
VDLV+ P D+ T G+ + AV+IIT+ V L+HK+ G+
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGL-AVSIITETD---VKLIHKIEEEVGKKME 426
Query: 64 ELNWETITDDV 32
N + ITD +
Sbjct: 427 PYNKKVITDSL 437
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 256 NTERNQYLVLGVGTNPNGDHMAF 324
N N L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292
>At2g35380.1 68415.m04337 peroxidase 20 (PER20) (P20) identical to
SP|Q9SLH7 Peroxidase 20 precursor (EC 1.11.1.7) (Atperox
P20) (ATP28a) {Arabidopsis thaliana}
Length = 336
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = -2
Query: 265 AQCSDLEVDLVVLPQSNELPADFRACFVLTVAEGKSAIVAVNIITQRQSE 116
+QC D D + P + PA F + + + EG+ +++ N++ E
Sbjct: 237 SQCKDSSRDNELSPLDIKTPAYFDNHYFINLLEGRGLLISDNVLVSEDHE 286
>At4g28590.1 68417.m04089 expressed protein
Length = 331
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 100 HKLNGVFGEDKSELNWETITDD 35
H + V G+D SE++WE DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201
>At2g42000.1 68415.m05195 plant EC metallothionein-like family 15
protein 84 C-terminal residues identical to EC protein
homolog 1 (SP:P93746) {Arabidopsis thaliana}; contains
Pfam PF02068: Plant PEC family metallothionein profile;
Length = 115
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 487 HCIPRPCGYPRFQAS*TVSKPC-CIHGCRC 401
HC PC P+ Q T +K C C GC C
Sbjct: 82 HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTC 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,682
Number of Sequences: 28952
Number of extensions: 271699
Number of successful extensions: 835
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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