Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0878
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.0  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   5.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.7  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 274 FIYWLSTAPSLGHVPLYPSEL 212
           F+Y  S   SLG VP++P  L
Sbjct: 313 FVYDASITASLGRVPIWPYTL 333


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 274 FIYWLSTAPSLGHVPLYPSEL 212
           F+Y  S   SLG VP++P  L
Sbjct: 320 FVYDASITASLGRVPIWPYTL 340


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 186 SINKQFHVKEIPHFGKVEDQDTFDQ 112
           ++++ F V+  PH G+VE  D+ ++
Sbjct: 480 AMSRPFEVRFNPHTGRVEVLDSVEK 504


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 196 YLNQYQQTVSCERDPSLRESRRPGYLRSA 110
           Y  +Y    S  R P  R  ++PG  + A
Sbjct: 195 YCTRYSDRPSSGRSPRTRRVKKPGAKQGA 223


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 453 YQKSSYRPSEAP 418
           Y K  Y+PS+AP
Sbjct: 429 YAKGPYQPSQAP 440


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 453 YQKSSYRPSEAP 418
           Y K  Y+PS+AP
Sbjct: 429 YAKGPYQPSQAP 440


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,739
Number of Sequences: 336
Number of extensions: 3281
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)