Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0878
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 76 4e-15
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 40 3e-04
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 29 0.85
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 27 3.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.9
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 7.9
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 76.2 bits (179), Expect = 4e-15
Identities = 34/81 (41%), Positives = 54/81 (66%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
L ++ G+KV+IP Y + ++ TNTL+ A ++++EGI Y ++R L + +F+DT
Sbjct: 92 LLELKQGRKVDIPIYSFNEHNRLPETNTLFGASIIILEGIFALYDEKIRSLLDVSVFLDT 151
Query: 187 DSDTRLARRVPRDIMERGRDL 249
DSD L+RR+ RDI RGRD+
Sbjct: 152 DSDVCLSRRLNRDINYRGRDI 172
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 255 VLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
VL QY FVKP++E F + D+I+PRG DN +AID+++ I
Sbjct: 175 VLEQYNKFVKPSYENFVRRQLSYTDLIVPRGRDNKLAIDMVINFI 219
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 246 LGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHISDYL 401
L VLN ++ KPA++ PT++ AD+I+P+ + A+ + QH+ D L
Sbjct: 145 LTKVLNDFVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDIL 196
Score = 35.1 bits (77), Expect = 0.010
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 106 VVLIEGILVFYFPEVRDLFHMKLFVDTDSDTRLARRVPRDIMERGRDLEQCSTSI*TL*S 285
++LIEG + PE+ + K+FV D+DTRL R V + + DL + TL
Sbjct: 99 IILIEGYYLL-LPELLPYYTSKIFVYEDADTRLERCVLQRVKAEKGDLTKVLNDFVTLSK 157
Query: 286 QHLKSSVF-RQKNSLTSLSREEQI 354
SS+ ++N+ L ++E I
Sbjct: 158 PAYDSSIHPTRENADIILPQKENI 181
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +1
Query: 10 KDILAGKKVEIPEY---DYISNSISNRTNTLYPAD 105
KD+LA ++V+ E D I+++I+N+T L PAD
Sbjct: 31 KDVLADQRVDNTESQVKDEITSNITNQTQILLPAD 65
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +3
Query: 189 FRYQTCETSSEGYNGTWPRLGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAI 368
FR+ T ++ L V+ QY + + ++ C+P + + P+ D++
Sbjct: 348 FRFHTQQSEDSFDTPEGVELSKVIKQYRDDLNLSYVFGCIPKNYYMTEVSPQAEDSI--F 405
Query: 369 DLIVQHI 389
L+V HI
Sbjct: 406 KLMVDHI 412
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -1
Query: 251 SKSRPRSIISLGTRLASLVSESVSTNSFM*KRSLTSGK*KTRIPSISTTSAGYS 90
S S P S S+ + ++S S SVS++S S++S KT S ++T +G+S
Sbjct: 162 SSSTPISS-SITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTISGFS 214
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -2
Query: 325 ANFFVGRQNSSNAGFTKFIYWLSTAPSLGHVPLYPSELVSQVWYLNQYQQTVSCERDPSL 146
+N G+Q N K P +GHV + +V+Q ++ + ++ ++D +
Sbjct: 148 SNVVEGKQEPVNNDTLKDSKLQKLEPIMGHVSILTQLIVAQNPQNSKEEIIITSDKDEHI 207
Query: 145 RESRRP 128
R SR P
Sbjct: 208 RISRFP 213
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 559 LYNSMYNNVIKNA*FLRIERKTT*CGRPPFELRCGLSEIELP 434
L S + NVI N LR + +TT R PF + S++++P
Sbjct: 2322 LLRSSWENVISNVSILRTKFQTTKHKRSPF-CQVTYSKVDIP 2362
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 276 FVKPAFEEFCLPTKKFADVIIPR 344
F P + FC PT+++ D+ + R
Sbjct: 894 FSCPYYTHFCHPTRRYIDICVQR 916
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,302
Number of Sequences: 5004
Number of extensions: 56593
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -