Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0878
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 86 3e-17
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 86 3e-17
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 80 2e-15
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765... 77 1e-14
02_05_0408 + 28720508-28721052,28721346-28721430,28721520-287216... 54 8e-08
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414... 53 3e-07
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807... 53 3e-07
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982... 37 0.018
05_05_0274 - 23755384-23755655,23755780-23756139,23756316-237564... 36 0.041
04_01_0211 + 2649405-2649950,2650100-2650285,2650367-2650583,265... 30 1.5
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019... 29 2.7
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 29 2.7
06_03_0818 - 24963652-24964983 28 6.2
08_02_1085 + 24237804-24238403 28 8.2
06_01_0988 - 7660092-7660168,7660260-7660328,7660418-7660462,766... 28 8.2
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 85.8 bits (203), Expect = 3e-17
Identities = 37/82 (45%), Positives = 59/82 (71%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
++++ GK V+IP Y++ + + P+DV+++EGILVF+ VRDL +MK+FVDT
Sbjct: 145 MENLKHGKAVDIPNYNFKTYKSVASARKVNPSDVIILEGILVFHDSRVRDLMNMKIFVDT 204
Query: 187 DSDTRLARRVPRDIMERGRDLE 252
D+D RL RR+ RD +E+GRD++
Sbjct: 205 DADVRLTRRIRRDTIEKGRDIK 226
Score = 79.4 bits (187), Expect = 3e-15
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +3
Query: 255 VLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
VL+QY FVKPAFE+F LPTKK+AD+IIPRG DN VAIDLIVQHI
Sbjct: 228 VLDQYSKFVKPAFEDFILPTKKYADIIIPRGGDNDVAIDLIVQHI 272
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 85.8 bits (203), Expect = 3e-17
Identities = 37/82 (45%), Positives = 59/82 (71%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
++++ GK V+IP Y++ + + P+DV+++EGILVF+ VRDL +MK+FVDT
Sbjct: 120 MENLKHGKAVDIPNYNFKTYKSVASARKVNPSDVIILEGILVFHDSRVRDLMNMKIFVDT 179
Query: 187 DSDTRLARRVPRDIMERGRDLE 252
D+D RL RR+ RD +E+GRD++
Sbjct: 180 DADVRLTRRIRRDTIEKGRDIK 201
Score = 79.4 bits (187), Expect = 3e-15
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +3
Query: 255 VLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
VL+QY FVKPAFE+F LPTKK+AD+IIPRG DN VAIDLIVQHI
Sbjct: 203 VLDQYSKFVKPAFEDFILPTKKYADIIIPRGGDNDVAIDLIVQHI 247
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Frame = +1
Query: 22 AGKKVEIPEYDYISNS-ISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDTDSDT 198
+G V IP YD+ ++ S + +DV+++EGILVF+ VRDL MK+FVDTD+D
Sbjct: 141 SGLSVNIPIYDFKNHRRCSESFRKVNASDVIILEGILVFHDQRVRDLMDMKIFVDTDADI 200
Query: 199 RLARRVPRDIMERGRDL 249
RLARR+ RD +ERGRD+
Sbjct: 201 RLARRIRRDTVERGRDV 217
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/46 (76%), Positives = 40/46 (86%)
Frame = +3
Query: 252 AVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+VL QY FVKPAF++F LP+KK+ADVIIPRG DN VAIDLIVQHI
Sbjct: 219 SVLEQYGRFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 264
>09_04_0658 +
19275129-19275363,19275453-19275544,19276440-19276509,
19276617-19276735,19277026-19277122,19277229-19277308,
19277443-19277637,19277727-19277810,19277931-19277991,
19278682-19278742,19279162-19279255,19279357-19279429,
19279834-19279916,19280008-19280154
Length = 496
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = +3
Query: 246 LGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+ +VL QY FVKPAF++F LP+KK+ADVIIPRG DN VAIDLIVQHI
Sbjct: 225 VSSVLEQYGRFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 272
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/73 (49%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Frame = +1
Query: 34 VEIPEYDYISNSISNRT-NTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDTDSDTRLAR 210
V +P YD+ ++ S+ + + +DV+++EGILVF+ VR+L MK+FVDTD+D RLAR
Sbjct: 153 VNVPIYDFKNHRRSSESFRKVNASDVIILEGILVFHDQRVRNLMDMKIFVDTDADIRLAR 212
Query: 211 RVPRDIMERGRDL 249
R+ RD +ERGRD+
Sbjct: 213 RIRRDTVERGRDV 225
>02_05_0408 +
28720508-28721052,28721346-28721430,28721520-28721604,
28721775-28722019,28722250-28722501
Length = 403
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/88 (29%), Positives = 47/88 (53%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
+K I GK +E P Y++++ + + + P + +IEG+ + VRDL +++D
Sbjct: 141 VKAIKEGKAIEKPIYNHVTGLL-DPPELIQPPKIFVIEGLHPMFDERVRDLLDFSIYLDI 199
Query: 187 DSDTRLARRVPRDIMERGRDLEQCSTSI 270
+ + A ++ RD+ ERG LE SI
Sbjct: 200 SDEVKFAWKIQRDMAERGHSLESIKASI 227
>04_04_1016 -
30139691-30139951,30140066-30140134,30141267-30141470,
30141552-30141808,30141899-30141983,30142080-30142164,
30142269-30142795
Length = 495
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/88 (30%), Positives = 46/88 (52%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
LK I G+ V P Y++ + + + + P ++++EG+ Y VR L +++D
Sbjct: 135 LKAIKEGRAVAKPIYNH-ATGLLDPPELITPPKILVVEGLHPMYDERVRGLLDFSIYLDI 193
Query: 187 DSDTRLARRVPRDIMERGRDLEQCSTSI 270
SD + A ++ RD+ ERG LE SI
Sbjct: 194 SSDIKFAWKIQRDMAERGHSLESIKASI 221
>04_04_1009 -
30078988-30079248,30079363-30079431,30080564-30080767,
30080849-30081105,30081196-30081280,30081377-30081461,
30081566-30082092
Length = 495
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/88 (30%), Positives = 46/88 (52%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
LK I G+ V P Y++ + + + + P ++++EG+ Y VR L +++D
Sbjct: 135 LKAIKEGRAVAKPIYNH-ATGLLDPPELITPPKILVVEGLHPMYDERVRGLLDFSIYLDI 193
Query: 187 DSDTRLARRVPRDIMERGRDLEQCSTSI 270
SD + A ++ RD+ ERG LE SI
Sbjct: 194 SSDIKFAWKIQRDMAERGHSLESIKASI 221
>02_05_0469 +
29297209-29297527,29297847-29297961,29298060-29298255,
29298427-29298540,29298695-29298868,29299326-29299520,
29299666-29299788,29299892-29300004,29300117-29300237,
29300363-29300623,29301712-29301921
Length = 646
Score = 36.7 bits (81), Expect = 0.018
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 25 GKKVEIPEYDY-ISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDTDSDTR 201
G+ V++P YD+ +S RT + + +V+IEGI ++R + +++ V
Sbjct: 126 GRSVQVPIYDFKMSCRTGYRTVDVPSSRIVIIEGIYAL-SEKLRSVLDLRVSVTGGVHFD 184
Query: 202 LARRVPRDIMERGRDLEQ 255
L +RV RDI G++ E+
Sbjct: 185 LVKRVLRDIQRAGQEPEE 202
>05_05_0274 -
23755384-23755655,23755780-23756139,23756316-23756474,
23756757-23757235,23757344-23757475,23757723-23757797,
23757882-23757950,23758025-23758096,23758196-23758267,
23758348-23758419,23758526-23758687,23758786-23758857,
23758955-23759029,23759615-23759686,23759781-23759901,
23760051-23760138
Length = 783
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -3
Query: 510 ELSGRQPNAGDPLLSSAVDYQKSSYRPSEAPRWDSSSDSLRYVVLSN 370
+L+G P+ + + VD +++ PS AP W +S SL VVLSN
Sbjct: 275 KLTGSVPDLSNMTNLNVVDLSNNTFDPSVAPSWFTSLTSLASVVLSN 321
>04_01_0211 +
2649405-2649950,2650100-2650285,2650367-2650583,
2650705-2650781,2650884-2650892
Length = 344
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 299 LFKCWLHKVHILVEHCSKSRPRSIISLGTRLASLVSESVSTNSFM 165
LFK W+ +H + CS+ +S G L +LV +S S M
Sbjct: 289 LFKVWVEMLHYVSHRCSRESHAKQLSSGGWLVTLVLAKLSLASHM 333
>05_03_0418 +
13700855-13700942,13701602-13701728,13701845-13701916,
13702079-13702153,13702290-13702361,13702477-13702638,
13702726-13702800,13702880-13702951,13703040-13703108,
13703196-13703264,13703355-13703429,13703522-13703593,
13703668-13703737,13703920-13704361,13704442-13704573,
13704664-13704803,13704910-13705129,13705301-13705536,
13705732-13706256
Length = 930
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 510 ELSGRQPNAGDPLLSSAVDYQKSSYRPSEAPRWDSS 403
+LSG PN + VD +S+ PSE P W +S
Sbjct: 277 KLSGLMPNLTGMDMLENVDLSNNSFIPSEVPSWFTS 312
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 353 ICSSRDNDVSEFFCRKTELFKCWLHKVHILVEHCSK 246
I +D+D +EF+ E+FK +HI + CSK
Sbjct: 29 IGQGKDSDRTEFYGYIKEMFKLGFEVLHIYISTCSK 64
>06_03_0818 - 24963652-24964983
Length = 443
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 55 YISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDTDSDTR 201
Y+S+ +N + A +L G+L FP +R LF FV D D R
Sbjct: 84 YVSDFSANPSCAAPSAATLLTSGLLAASFPRLRSLFVYGCFVG-DDDAR 131
>08_02_1085 + 24237804-24238403
Length = 199
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 510 ELSGRQPNAGDPLLSSAVDYQKSSYRPSEAPRWDSSSDS 394
E SG+ P A P ++A S PSEAP +S ++S
Sbjct: 59 EKSGKAPAAAPPKAAAAKAPSGKSEAPSEAPDAESGAES 97
>06_01_0988 -
7660092-7660168,7660260-7660328,7660418-7660462,
7660683-7660767,7660930-7661041,7661113-7661228,
7661325-7661495,7661572-7661703,7662278-7662366,
7662761-7662824,7663043-7663148,7663507-7663613,
7663744-7663797,7664105-7664226,7664593-7664748,
7664861-7665059
Length = 567
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 ATLKDILAGKKVEIPEY-DYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDL 159
A + + +A KK + DYI++ + R Y V+LI L+ + PEV+ L
Sbjct: 294 ALIGEEVAAKKETLKSVTDYITDIVCKRAELGYNYGVILIPEGLIDFIPEVQKL 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,569,505
Number of Sequences: 37544
Number of extensions: 329520
Number of successful extensions: 803
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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