Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0878
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55931| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 28   8.4  
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)                     28   8.4  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 28   8.4  

>SB_55931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 26/86 (30%)
 Frame = +1

Query: 34  VEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRD------------------- 156
           ++IP YD+ ++        LY A+V++ EGI+ F + E+RD                   
Sbjct: 63  LQIPIYDFKTHGRLPEKTDLYGANVIIFEGIMAFAYKELRDVCYNCFALFTTWNFACVFS 122

Query: 157 -------LFHMKLFVDTDSDTRLARR 213
                  L  MK+FVDTD D RLARR
Sbjct: 123 RSNGLNLLMDMKVFVDTDPDIRLARR 148


>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 736

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 356 IICSSRDNDVSEFFCRKTELFKCWLHKVHILVEHCSKS 243
           I  S R   +S++  ++++LFK W +KV  LV+ C  S
Sbjct: 337 IAISKRQRYLSKYG-KESDLFKSWRNKVQRLVKQCKGS 373


>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 356 IICSSRDNDVSEFFCRKTELFKCWLHKVHILVEHCSKS 243
           I  S R   +S++  ++++LFK W +KV  LV+ C  S
Sbjct: 423 IAISKRQRYLSKYG-KESDLFKSWRNKVQRLVKQCKGS 459


>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
          Length = 359

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 356 IICSSRDNDVSEFFCRKTELFKCWLHKVHILVEHCSKS 243
           I  S R   +S++  ++++LFK W +KV  LV+ C  S
Sbjct: 188 IAISKRQRYLSKYG-KESDLFKSWRNKVQRLVKQCKGS 224


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 356 IICSSRDNDVSEFFCRKTELFKCWLHKVHILVEHCSKS 243
           I  S R   +S++  ++++LFK W +KV  LV+ C  S
Sbjct: 423 IAISKRQRYLSKYG-KESDLFKSWRNKVQRLVKQCKGS 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,504,998
Number of Sequences: 59808
Number of extensions: 383915
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)