Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0878
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    27   0.43 
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    27   0.43 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   7.0  

>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 336 IPRGADN-LVAIDLIVQHISDYLK-KNPSEVLLTGGSSISDSPQ 461
           + +G D+ L+ +D++ Q + + L   NPSE L+    + SD+PQ
Sbjct: 94  VAQGVDSGLLDLDVLEQALFERLMLPNPSEYLIPNNITTSDTPQ 137


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -2

Query: 259  STAPSLGHVPLYP---SELVSQVWYLNQYQQTVSCERDPSLRES--RRPGYLRSAQRQLG 95
            +TA ++GH  LYP   +  + +    N Y   ++ +R+PS   +   RP Y R+ +   G
Sbjct: 1184 ATAAAVGHAKLYPEGGAHSLDRSSIRNWYPDKLTVQRNPSAATTLPTRPDYARTYRAAAG 1243


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 309 PTKKFADVIIPRGADNLVAIDLIVQHISDYLKKNPSEVL----LTGGSSISDSP 458
           PT+   + I P+ ++    + +++Q    +LK++  E L    L G  S SD P
Sbjct: 235 PTELILECIPPKPSNLTQLLRMLIQRQIAFLKQHRYEPLAVYGLDGNDSASDKP 288


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,098
Number of Sequences: 2352
Number of extensions: 13051
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)