Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0878
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27440.1 68416.m03430 uracil phosphoribosyltransferase, putat... 87 1e-17
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat... 86 2e-17
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat... 86 2e-17
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat... 86 2e-17
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 82 3e-16
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 82 3e-16
At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putat... 81 9e-16
At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putat... 79 4e-15
At1g32060.1 68414.m03944 phosphoribulokinase (PRK) / phosphopent... 52 5e-07
At1g26190.1 68414.m03196 phosphoribulokinase/uridine kinase fami... 50 1e-06
At1g73980.1 68414.m08568 phosphoribulokinase/uridine kinase fami... 42 5e-04
At1g79620.1 68414.m09283 leucine-rich repeat transmembrane prote... 32 0.32
At1g03030.1 68414.m00275 phosphoribulokinase/uridine kinase fami... 29 3.0
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 28 6.8
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 28 6.8
At1g63770.2 68414.m07216 peptidase M1 family protein similar to ... 28 6.8
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ... 28 6.8
At5g40390.1 68418.m04899 raffinose synthase family protein simil... 27 9.0
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ... 27 9.0
>At3g27440.1 68416.m03430 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 465
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/82 (45%), Positives = 59/82 (71%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
++ + +G+ V IP YD+ + ++ + P DV+++EGILV P VRDL +MK+FVDT
Sbjct: 98 MEKLRSGQPVNIPSYDFKIHQSIESSSPVNPGDVIILEGILVLNDPRVRDLMNMKIFVDT 157
Query: 187 DSDTRLARRVPRDIMERGRDLE 252
D+D RL+RR+ RD +ERGR+++
Sbjct: 158 DADVRLSRRIQRDTVERGRNIQ 179
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +3
Query: 255 VLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
VL QY FVKP+F+E+ P+ K+AD+IIPRG DN VAIDLIVQHI
Sbjct: 181 VLEQYTKFVKPSFDEYIQPSMKYADIIIPRGGDNDVAIDLIVQHI 225
>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/85 (45%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 ATLKDILAGKKVEIPEYDYIS--NSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKL 174
++++ + G+ V+IP YD+ S N++ + P+DV+++EGIL+F+ P VRDL +MK+
Sbjct: 111 SSMEKLRKGQAVDIPNYDFKSYKNNVFP-PRRVNPSDVIILEGILIFHDPRVRDLMNMKI 169
Query: 175 FVDTDSDTRLARRVPRDIMERGRDL 249
FVD D+D RLARR+ RD +E+GRD+
Sbjct: 170 FVDADADVRLARRIKRDTVEKGRDI 194
Score = 80.6 bits (190), Expect = 9e-16
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +3
Query: 246 LGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+ VL+QY FVKPAFE+F LPTKK+AD+IIPRG DN VAIDLIVQHI
Sbjct: 194 IATVLDQYSKFVKPAFEDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 241
>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/85 (45%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 ATLKDILAGKKVEIPEYDYIS--NSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKL 174
++++ + G+ V+IP YD+ S N++ + P+DV+++EGIL+F+ P VRDL +MK+
Sbjct: 111 SSMEKLRKGQAVDIPNYDFKSYKNNVFP-PRRVNPSDVIILEGILIFHDPRVRDLMNMKI 169
Query: 175 FVDTDSDTRLARRVPRDIMERGRDL 249
FVD D+D RLARR+ RD +E+GRD+
Sbjct: 170 FVDADADVRLARRIKRDTVEKGRDI 194
Score = 80.6 bits (190), Expect = 9e-16
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +3
Query: 246 LGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+ VL+QY FVKPAFE+F LPTKK+AD+IIPRG DN VAIDLIVQHI
Sbjct: 194 IATVLDQYSKFVKPAFEDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 241
>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/85 (45%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 ATLKDILAGKKVEIPEYDYIS--NSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKL 174
++++ + G+ V+IP YD+ S N++ + P+DV+++EGIL+F+ P VRDL +MK+
Sbjct: 111 SSMEKLRKGQAVDIPNYDFKSYKNNVFP-PRRVNPSDVIILEGILIFHDPRVRDLMNMKI 169
Query: 175 FVDTDSDTRLARRVPRDIMERGRDL 249
FVD D+D RLARR+ RD +E+GRD+
Sbjct: 170 FVDADADVRLARRIKRDTVEKGRDI 194
Score = 80.6 bits (190), Expect = 9e-16
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +3
Query: 246 LGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+ VL+QY FVKPAFE+F LPTKK+AD+IIPRG DN VAIDLIVQHI
Sbjct: 194 IATVLDQYSKFVKPAFEDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 241
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/83 (46%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYIS--NSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFV 180
++ + G+ V+IP+YD+ + +S+ R N P DV+++EGIL+F+ P VR L +MK+FV
Sbjct: 51 MEKLRQGQAVDIPKYDFKTYRSSVFRRVN---PTDVIILEGILLFHDPRVRKLMNMKIFV 107
Query: 181 DTDSDTRLARRVPRDIMERGRDL 249
TD+D RLARR+ RD +E GRD+
Sbjct: 108 CTDADVRLARRIKRDTVENGRDI 130
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +3
Query: 246 LGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+G VL+QY FVKPAF++F LPTKK+AD+IIPRG DN VAIDLIVQHI
Sbjct: 130 IGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 177
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/83 (46%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYIS--NSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFV 180
++ + G+ V+IP+YD+ + +S+ R N P DV+++EGIL+F+ P VR L +MK+FV
Sbjct: 51 MEKLRQGQAVDIPKYDFKTYRSSVFRRVN---PTDVIILEGILLFHDPRVRKLMNMKIFV 107
Query: 181 DTDSDTRLARRVPRDIMERGRDL 249
TD+D RLARR+ RD +E GRD+
Sbjct: 108 CTDADVRLARRIKRDTVENGRDI 130
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +3
Query: 246 LGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+G VL+QY FVKPAF++F LPTKK+AD+IIPRG DN VAIDLIVQHI
Sbjct: 130 IGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 177
>At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 483
Score = 80.6 bits (190), Expect = 9e-16
Identities = 40/82 (48%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = +1
Query: 13 DIL-AGKKVEIPEYDYISNSIS-NRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
DIL +G+ +IP YD+ ++ + + DV+++EGILVF+ VRDL +MK+FVDT
Sbjct: 132 DILKSGQPYQIPIYDFKTHQRKVDAFRQVNACDVIILEGILVFHDSRVRDLMNMKIFVDT 191
Query: 187 DSDTRLARRVPRDIMERGRDLE 252
D+D RLARR+ RD +ERGRD++
Sbjct: 192 DADVRLARRIRRDTVERGRDVD 213
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +3
Query: 252 AVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+VL QY FVKPAF++F LP+KK+ADVIIPRG DN VA+DLIVQHI
Sbjct: 214 SVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAVDLIVQHI 259
>At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 486
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/77 (46%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Frame = +1
Query: 22 AGKKVEIPEYDYISNSISNRT-NTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDTDSDT 198
+G+ ++P YD+ ++ + T + +DV+++EGILVF+ VR+L +MK+FVDTD+D
Sbjct: 136 SGQPYQVPIYDFKTHQRRSDTFRQVNASDVIILEGILVFHDSRVRNLMNMKIFVDTDADV 195
Query: 199 RLARRVPRDIMERGRDL 249
RLARR+ RD +ERGRD+
Sbjct: 196 RLARRIRRDTVERGRDV 212
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = +3
Query: 246 LGAVLNQYMNFVKPAFEEFCLPTKKFADVIIPRGADNLVAIDLIVQHI 389
+ +VL QY FVKPAF++F LP+KK+ADVIIPRG DN VA+DLI QHI
Sbjct: 212 VNSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAVDLITQHI 259
>At1g32060.1 68414.m03944 phosphoribulokinase (PRK) /
phosphopentokinase nearly identical to SP|P25697
Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)
(Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis
thaliana}
Length = 395
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/88 (28%), Positives = 48/88 (54%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNSISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDT 186
+K + G VE P Y++++ + + + P +++IEG+ + VRDL +++D
Sbjct: 134 VKALKNGIAVEKPIYNHVTGLL-DPPELIQPPKILVIEGLHPMFDERVRDLLDFSIYLDI 192
Query: 187 DSDTRLARRVPRDIMERGRDLEQCSTSI 270
++ + A ++ RD+ ERG LE SI
Sbjct: 193 SNEVKFAWKIQRDMAERGHSLESIKASI 220
>At1g26190.1 68414.m03196 phosphoribulokinase/uridine kinase family
protein weak similarity to SP|Q59190 Uridine kinase (EC
2.7.1.48) (Uridine monophosphokinase) (Cytidine
monophosphokinase) {Borrelia burgdorferi}; contains Pfam
profile PF00485: Phosphoribulokinase / Uridine kinase
family
Length = 674
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDYISNS-ISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVD 183
L+D+ GK+VE+P YD+ S+S + RT + P+ +V+IEGI ++R L +++ V
Sbjct: 126 LEDLKEGKQVEVPIYDFKSSSRVGYRTLDVPPSRIVIIEGIYAL-SEKLRPLLDLRVSVT 184
Query: 184 TDSDTRLARRVPRDIMERGRDLEQ 255
L +RV RDI G+ E+
Sbjct: 185 GGVHFDLVKRVLRDIQRAGQQPEE 208
>At1g73980.1 68414.m08568 phosphoribulokinase/uridine kinase family
protein weak similarity to SP|Q59190 Uridine kinase (EC
2.7.1.48) (Uridine monophosphokinase) (Cytidine
monophosphokinase) {Borrelia burgdorferi}; contains Pfam
profile PF00485: Phosphoribulokinase / Uridine kinase
family
Length = 643
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 25 GKKVEIPEYDYISNS-ISNRTNTLYPADVVLIEGILVFYFPEVRDLFHMKLFVDTDSDTR 201
GK V++P YD+ S+S I RT + + +V++EGI ++R L +++ V
Sbjct: 132 GKPVQVPIYDFKSSSRIGYRTLEVPSSRIVILEGIYAL-SEKLRPLLDLRVSVTGGVHFD 190
Query: 202 LARRVPRDIMERGRDLEQ 255
L +RV RDI G++ E+
Sbjct: 191 LVKRVLRDIQRAGQEPEE 208
>At1g79620.1 68414.m09283 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GI:1389566 from [Arabidopsis thaliana]
Length = 971
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 510 ELSGRQPNAGDPLLSSAVDYQKSSYRPSEAPRWDSSSDSLRYVVL 376
+L G P+ D + VD +S+ PSE+P W S+ SL +V+
Sbjct: 284 KLVGSLPDLSDMKSMNYVDLSNNSFDPSESPLWFSTLPSLTTLVM 328
>At1g03030.1 68414.m00275 phosphoribulokinase/uridine kinase family
protein contains Pfam PF00485: Phosphoribulokinase /
Uridine kinase family; Belongs to Interpro IPR006083
Phosphoribulokinase/uridine kinase family; similar to
Uridine kinase (Uridine monophosphokinase) (SP:P27515)
{Saccharomyces cerevisiae}; ESTs gb|AA585719,
gb|AA728503 and gb|T22272 come from this gene
Length = 301
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 7 LKDILAGKKVEIPEYDY-ISNSISNRTNTLYPADVVLIEGILVFY----FPEVRDLFHMK 171
LK + V +P +D+ + + + + VV++EG + + ++ D+F K
Sbjct: 183 LKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLEEGSWKDISDMFDEK 242
Query: 172 LFVDTDSDTRLARRVPRDI 228
F+D + DT + R R I
Sbjct: 243 WFIDVNLDTAMQRVENRHI 261
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 355 LSAPRGIMTSANFFVGRQNSSNAGFTKF 272
+S PR M+S FF GR N + + F
Sbjct: 709 MSPPRNRMSSPRFFEGRNNGAGENYNSF 736
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 355 LSAPRGIMTSANFFVGRQNSSNAGFTKF 272
+S PR M+S FF GR N + + F
Sbjct: 709 MSPPRNRMSSPRFFEGRNNGAGENYNSF 736
>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
SP|P04825 Aminopeptidase N (EC 3.4.11.2)
(Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
contains Pfam profile PF01433: Peptidase family M1
Length = 945
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 334 MTSANFFVGRQNSSNAGFTKFIYWLSTA 251
+T +FF ++++NA F F+ W S A
Sbjct: 516 VTCEDFFAAMRDANNADFANFLQWYSQA 543
>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
SP|P04825 Aminopeptidase N (EC 3.4.11.2)
(Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
contains Pfam profile PF01433: Peptidase family M1
Length = 918
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 334 MTSANFFVGRQNSSNAGFTKFIYWLSTA 251
+T +FF ++++NA F F+ W S A
Sbjct: 516 VTCEDFFAAMRDANNADFANFLQWYSQA 543
>At5g40390.1 68418.m04899 raffinose synthase family protein similar
to galactinol-raffinose galactosyltransferase [Vigna
angularis] GI:6634701, seed imbibition protein
GB:AAA32975 GI:167100 from [Hordeum vulgare]; contains
Pfam profile PF05691: Raffinose synthase or seed
imbibition protein Sip1
Length = 783
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 268 YWLSTAPSLGHVPLYPSELVSQVWYLNQYQQTV---SCERDPSLRESRR 131
Y L T L PL+ + + ++W LN+Y + +C+ RE+RR
Sbjct: 571 YALPTRDRLFEDPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCRETRR 619
>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
similar to RNA-directed RNA polymerase GB:CAA09697
GI:4138282 [Nicotiana tabacum]
Length = 1107
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 204 KSGI*ISINKQFHVKEIPHFGKVEDQDTFDQHNV 103
K+G+ I + +VKE P F + D+ T++ NV
Sbjct: 890 KTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNV 923
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,763,733
Number of Sequences: 28952
Number of extensions: 277981
Number of successful extensions: 762
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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