Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0876
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    28   9.2  
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634...    28   9.2  

>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 205  IDRPYVVLWYPFTGFLQKLLCRTAKALHV---TKFAGF*KSISIGSHVSSKHKNQEYFQR 35
            ID  +V +W  F G+L  LL  TAKA  +    +   F  SI +    + + K      R
Sbjct: 1197 IDTEWVYMWDKFGGYLLLLLGLTAKAEQIQDEVRLRLFLDSIGLSDLSAKEIKKWMPEDR 1256

Query: 34   SHFDV 20
             HF++
Sbjct: 1257 RHFEL 1261


>02_04_0123 +
           19961904-19962096,19962836-19963029,19963334-19963465,
           19963921-19964038,19964248-19964484,19964576-19964658,
           19964777-19965004,19965394-19965470,19965590-19965626,
           19965786-19965952,19966156-19966234,19966301-19966378,
           19967459-19967575,19967999-19968379,19968453-19968590,
           19968680-19968769,19968832-19968840
          Length = 785

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -1

Query: 715 AEALMLCTTLI*HASAILQIAACLNVFKGSISGSKELLPESFSNALLKSELRVIFGSPML 536
           A+AL++  TLI  ++    +   L+    S+ GSKE L  ++    +   L  +  SP +
Sbjct: 181 ADALVIVGTLIIKSTDPETLTTMLDAITTSLGGSKEELSNTYKRIGMIKALAELSTSPAV 240

Query: 535 SHVN 524
             +N
Sbjct: 241 HQIN 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,567
Number of Sequences: 37544
Number of extensions: 395917
Number of successful extensions: 970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)