Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0876
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059)                   30   1.8  
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)                   28   7.1  
SB_14589| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059)
          Length = 408

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = +3

Query: 567 SDLSSALEKDSGNNSLEPDMEPLKTLRQAAICKIAEACYISVVHNIRASAKILPASSF 740
           +DLS+A+   +G  +L  ++E LKT+  +  C I  A  +++V  +R S ++  ++ F
Sbjct: 32  ADLSTAMNISTGGTALPINVELLKTVFVSEACLITCANLLALVVFLRKSFRVKKSTYF 89


>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
          Length = 1252

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 205 IDRPYVVLWYPFTGFLQKLLCRTAKALHVTKFAGF*KSISIGSH 74
           I+R +VV W+   G  +  +  T KAL +    G+ ++  + +H
Sbjct: 308 INRDFVVSWFRDVGEGEGFVGETRKALEILSLEGYKRACDVDAH 351


>SB_14589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 546 EPKITLSSDLSSALEKDSGNNSLEPDMEPLKTLRQAAIC 662
           EP+++LS+   +AL  + G N+++  +E L +L    +C
Sbjct: 67  EPQLSLSAQNMAALRDNLGINTIQSAVENLTSLVSGQVC 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,812,058
Number of Sequences: 59808
Number of extensions: 469643
Number of successful extensions: 1079
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)