Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0876
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 419 VKDFDCSVNSITMSPTICKSAFVFSST----VFALVSIWKSDICWFFKPVMFKFLKRITF 252
           V++  CS+   T++  +     V S+T     FA+ S   S +C+ ++ V+F  +  IT 
Sbjct: 321 VQEAGCSMTVTTVTNLVSFGNGVLSTTPVLQTFAIYSSVASVVCYIYQLVIFPAIIAITA 380

Query: 251 PHRWEQL 231
           P+ +++L
Sbjct: 381 PNEYQKL 387


>Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical
           protein F15A4.3 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 395 NSITMSPTICKSAFVFSSTVFALVSIWKSDICWFFKPVMFKF 270
           N   +  T  +S F+ S  VF  + +W+ ++ W  + V  KF
Sbjct: 192 NRTPLLQTCLQSIFIGSVAVFGYIMLWRVNLAWRNRIVNLKF 233


>Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical
           protein Y48E1B.5 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 134 SSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSD 247
           SS   Q L K     P  DI+PI P++  S+D I   D
Sbjct: 313 SSIFHQKLSKIFSAEPLPDIYPISPVIDFSMDTIYNDD 350


>AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical
           protein Y7A5A.1 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 311 SDICWFFKPVMFKFLKRITFPHR-WEQLHPMTSQLV 207
           +D+CWF+KP  +K ++  TF  +  E+  P+ S L+
Sbjct: 289 NDVCWFYKPWFYKHVE--TFLKKGGEEYIPLESYLL 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,362
Number of Sequences: 27780
Number of extensions: 360561
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)