Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0875
         (262 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   2.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   2.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   3.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   5.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    19   8.8  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 164 CLEPPDSRGSTVSISLPDSARLAS 235
           C  PPD  G+T+S S P+  R +S
Sbjct: 168 CRCPPDWEGTTLSQS-PNRRRASS 190


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 54  VMHVLRKKPIASISAIQMGFDVAS 125
           V+ +  +KP +    ++MG D+AS
Sbjct: 200 VVAMFSRKPCSINENLKMGLDIAS 223


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 54  VMHVLRKKPIASISAIQMGFDVAS 125
           V+ +  +KP +    ++MG D+AS
Sbjct: 200 VVAMFSRKPCSINENLKMGLDIAS 223


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 225 LAESGKDMLTVEPRESGGSKQCDFTS 148
           L +S  D     PR  GG+K   F++
Sbjct: 97  LKDSSSDSEDERPRPGGGTKYQTFSN 122


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  KKKTDSIDLRDPNGLRRRVSRFECETRLVK 157
           +KKT     +  NGL RR+      T+L++
Sbjct: 120 EKKTTRKSSQQENGLPRRLRTAYTNTQLLE 149


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +2

Query: 155 KSHCLEPPDSRGSTVSISLPDSARL 229
           +S+C++PP  + + ++ ++ D  +L
Sbjct: 335 RSYCIQPPCGQLNPINPNVFDVLKL 359


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,986
Number of Sequences: 336
Number of extensions: 942
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4164927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)