Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0875
(262 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 1.7
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 24 2.9
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 24 2.9
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 24 3.8
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 3.8
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 24 3.8
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 23 5.1
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 23 6.7
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 23 8.8
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 23 8.8
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 23 8.8
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 1.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -2
Query: 159 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 37
DF+SR + + RRR P SRR + RA ++R SG
Sbjct: 5 DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 24.2 bits (50), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 157 LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTCI 56
LY +F R ATS I + EID G+F N+ +
Sbjct: 467 LYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.2 bits (50), Expect = 2.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 92 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 220
L P+G R VS + +++K+ C P SRG TV PD+
Sbjct: 6 LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 3.8
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -1
Query: 136 FKTRDATSKPIWIAEIDAIGFFLN 65
++T++ + IW+ I +G++ N
Sbjct: 236 YETQEQITASIWVEHISKLGYYFN 259
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 23.8 bits (49), Expect = 3.8
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -2
Query: 237 AEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRA 58
+ +++ GK+ V P + DF + +S S+ ++S G R
Sbjct: 306 SSSTVERKGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPC 358
Query: 57 SRLRRSGYNSVRC 19
R R +G NS C
Sbjct: 359 GRCRDAGLNSEDC 371
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 23.8 bits (49), Expect = 3.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 109 PIWIAEIDAIGFFLNTCITAP 47
P W+AE+ AI F++ + AP
Sbjct: 43 PFWLAEVLAINSFVSIHMPAP 63
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -2
Query: 246 ASKAEASLAESGKDMLTVEPRESGGSKQ 163
A +AEA E+ K+++ EP+++ +K+
Sbjct: 103 AKEAEAKRLEAAKNIVLKEPKDAPAAKK 130
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 80 DSIDLRDPNGLRRRVSRFECETRLV 154
DS+ L NGL +R R ET+ +
Sbjct: 345 DSVPLEKINGLEQRALRLLAETKQI 369
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 22.6 bits (46), Expect = 8.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 131 FECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRLIP 262
+E R+ + CLEP + S+SLP+ +L + +A ++ P
Sbjct: 406 YEGTKRMKRVSCLEPHGAMYLHPSVSLPE--KLITTAKAQKIQP 447
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 252 LNASKAEASLAESGKDMLTVEPRESG 175
LNAS+AEA L++ L + P G
Sbjct: 1173 LNASQAEAYLSKMQVGDLVIRPSSKG 1198
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 22.6 bits (46), Expect = 8.8
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 258 ISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRS 88
+S NA K +S +PRE ++ F +HS R + PF SR+S
Sbjct: 43 LSSNAFKNNSSSISPSSS--AKDPREQ---RKRTFPLNDTHSSRARQHERPFRSRKS 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,031,798
Number of Sequences: 5004
Number of extensions: 17111
Number of successful extensions: 51
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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