Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0875
(262 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18250.1 68415.m02128 cytidylyltransferase domain-containing ... 28 0.98
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 27 1.3
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei... 27 1.3
At4g26190.1 68417.m03770 expressed protein 26 3.0
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy... 26 3.9
At3g53440.2 68416.m05898 expressed protein 26 3.9
At3g53440.1 68416.m05897 expressed protein 26 3.9
At2g17550.1 68415.m02031 expressed protein 26 3.9
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xy... 25 5.2
At4g03000.2 68417.m00408 expressed protein contains similarity t... 25 5.2
At4g03000.1 68417.m00407 expressed protein contains similarity t... 25 5.2
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 25 5.2
At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xy... 25 6.9
At5g14390.1 68418.m01681 expressed protein 25 9.1
At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family pr... 25 9.1
At4g20850.1 68417.m03025 subtilase family protein contains simil... 25 9.1
At2g14690.1 68415.m01652 glycosyl hydrolase family 10 protein si... 25 9.1
At2g04842.1 68415.m00498 threonyl-tRNA synthetase, putative / th... 25 9.1
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 25 9.1
>At2g18250.1 68415.m02128 cytidylyltransferase domain-containing
protein similar to CoA synthase [Mus musculus]
GI:21780289, bifunctional phosphopantetheine adenylyl
transferase / dephospho CoA kinase [Sus scrofa]
GI:20465246; contains Pfam profile PF01467:
Cytidylyltransferase
Length = 176
Score = 27.9 bits (59), Expect = 0.98
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = -2
Query: 261 GISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRS 88
G+S+N +AE L++ +++ + S G+K T R +++ ++++ P + S
Sbjct: 119 GLSVNRKRAERGLSQLKIEVVEIVSDGSSGNKISSSTLRKMEAEKASKQKQPAEEKAS 176
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 11 EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 163
+PR R LY D + + + K+T S+D+ NG + S+ E R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196
>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
hsp20 family protein contains Pfam profile: PF00011
Hsp20/alpha crystallin family
Length = 285
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 239 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 99
RPK P A + ++WSP S A + + +VA + A D+ +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216
>At4g26190.1 68417.m03770 expressed protein
Length = 1067
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 136 FKTRDATSKPIWIAEIDAIGFFLNTCITAPK 44
FKT++ KP+++ ++ + + TCI+ K
Sbjct: 944 FKTQEKKDKPLFLKDLRRVWDHIGTCISCGK 974
>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595
Length = 544
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 145 RFAFKTRDATSKPIWIAEID 86
R A T AT PIW+ EID
Sbjct: 398 RSALDTLGATGLPIWLTEID 417
>At3g53440.2 68416.m05898 expressed protein
Length = 512
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 11 EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 190
+P R+ L++RD++VK + D +P RR RLV S DSR
Sbjct: 12 QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71
Query: 191 STVSIS 208
++IS
Sbjct: 72 KKLNIS 77
>At3g53440.1 68416.m05897 expressed protein
Length = 512
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 11 EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 190
+P R+ L++RD++VK + D +P RR RLV S DSR
Sbjct: 12 QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71
Query: 191 STVSIS 208
++IS
Sbjct: 72 KKLNIS 77
>At2g17550.1 68415.m02031 expressed protein
Length = 765
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +2
Query: 47 RSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 226
R+ D + T + + D N LRR+++ E E ++ EP + V + PD
Sbjct: 527 RNVDYLSQVSTPDVTVSDENELRRQINELESEVQVRTPVEEEPIQEIETIVDLGNPDKVF 586
Query: 227 LASALEA 247
+ L A
Sbjct: 587 VRDLLVA 593
>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595
Length = 576
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 145 RFAFKTRDATSKPIWIAEID 86
R A T AT PIW+ EID
Sbjct: 429 RSALDTFGATGLPIWLTEID 448
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 249 NASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 82
N+ AS A GK++ +V G+K TS VS K + R+ +ML
Sbjct: 272 NSKNPHASGATPGKEVFSVSTASGEGTKSASLTS-VSDEKLVSCRKGRTKKEMAML 326
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 249 NASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 82
N+ AS A GK++ +V G+K TS VS K + R+ +ML
Sbjct: 272 NSKNPHASGATPGKEVFSVSTASGEGTKSASLTS-VSDEKLVSCRKGRTKKEMAML 326
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 248 TPLRPKPA*PNPARICS 198
+P+RP PA P+P RI S
Sbjct: 274 SPVRPTPAPPSPPRISS 290
>At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595; contains Pfam profile PF00331:
Glycosyl hydrolase family 10
Length = 576
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 145 RFAFKTRDATSKPIWIAEID 86
R A T AT PIW+ E+D
Sbjct: 429 RSALDTLAATGLPIWLTEVD 448
>At5g14390.1 68418.m01681 expressed protein
Length = 369
Score = 24.6 bits (51), Expect = 9.1
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 237 AEASLAESGKDMLTVE-PRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTR 61
+ AS A+ K +E PR+S ++ R S KRE + S++S L + F
Sbjct: 267 SRASTAQLEKQSSDLEMPRQSVDRRE---KPRQSVDKREKEKPPKGPSKKSKLRITFEQH 323
Query: 60 ASRLRRS 40
R RRS
Sbjct: 324 LDRTRRS 330
>At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 409
Score = 24.6 bits (51), Expect = 9.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 240 KAEASLAESGKDMLTVEPRESGGSKQCDF-TSRVSHSKRETRRRSPFGSRRSML 82
K +S ++S + L V+ G T R HS E RRRS R ML
Sbjct: 126 KESSSTSQSHRVDLRVKADVRGSPNDQKLNTPRSKHSATEQRRRSKINDRFQML 179
>At4g20850.1 68417.m03025 subtilase family protein contains
similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
(TPP-II) (Tripeptidyl aminopeptidase)
(Swiss-Prot:P29144) [Homo sapiens]
Length = 1380
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 66 TRASRLRRSGYNSVRCRGSE 7
+R RLRRSG++++ C S+
Sbjct: 56 SRGIRLRRSGFSAMPCSSSD 75
>At2g14690.1 68415.m01652 glycosyl hydrolase family 10 protein
similar to tapetum specific protein GI:3885492 from [Zea
mays]
Length = 529
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 145 RFAFKTRDATSKPIWIAEID 86
R+A T + S P+W+ E+D
Sbjct: 374 RYALDTLGSLSFPVWLTEVD 393
>At2g04842.1 68415.m00498 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|P18256
Threonyl-tRNA synthetase 2 (EC 6.1.1.3) (Threonine--tRNA
ligase) (ThrRS) {Bacillus subtilis}; contains Pfam
profiles PF00587: tRNA synthetase class II core domain
(G, H, P, S and T), PF03129: Anticodon binding domain
Length = 650
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 62 RVKKKTDSIDLRDPNGLRRRVSRFECETRLV 154
R+KK+ D I R+ LR VSR E + R++
Sbjct: 129 RIKKEMDRIISRNLPLLREEVSREEAKKRIM 159
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 180 SGGSKQCDFTSRVSHSKRETRR 115
SGG+++CD + + SK E R+
Sbjct: 220 SGGNRECDVKAEENKSKPEERK 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,621,984
Number of Sequences: 28952
Number of extensions: 97701
Number of successful extensions: 322
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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