Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0868
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    27   2.4  
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    27   4.1  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   4.1  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   5.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.5  

>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 682 SSVDLFPSTLHYHFHTSPSHMH 747
           S + +F +TLH+H   S ++MH
Sbjct: 260 SHIQVFRNTLHFHIKASKAYMH 281


>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 47  NPLDYKIWQHLEEKAC--SKPHPNLESLKTSLIKAAADIDMDLVRAAIDD 190
           N L Y I ++ E + C  S PHP+   +   +  A +   +D++R  +DD
Sbjct: 48  NSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDD 97


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 320 KQVYSLYNHSYTKMNLIKHRFLDTKVIQNDLRDFEYRPSIC 198
           +  ++  +H YT +N I    L  K+ +N + + +Y   IC
Sbjct: 799 RMYFTKESHIYTLLNCILESGLPMKLPRNQIPELDYLTQIC 839


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 697 FPSTLHYHFHTSPSH 741
           FP T H+H HT P H
Sbjct: 163 FPPTQHHHPHTRPPH 177


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 440 IICKNLLFLHLIPLGGVGTANFSFHS 517
           ++C +L+FL+++ L      N SF+S
Sbjct: 713 VLCDSLIFLNILRLSDAQLTNSSFYS 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,187
Number of Sequences: 5004
Number of extensions: 64699
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)