Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0868
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)                   48   1e-05
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             46   3e-05
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                 44   1e-04
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                  44   2e-04
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           39   0.005
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_19248| Best HMM Match : HECT (HMM E-Value=7.2e-10)                  31   1.1  
SB_34685| Best HMM Match : RNA_pol_A_bac (HMM E-Value=1.8)             30   1.9  
SB_29477| Best HMM Match : Antistasin (HMM E-Value=9.2)                29   5.8  
SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_49079| Best HMM Match : DUF1393 (HMM E-Value=5.8)                   28   7.6  
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    28   7.6  

>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 24/74 (32%), Positives = 39/74 (52%)
 Frame = +2

Query: 20  DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPR 199
           +W   SPDLNP D+ +W  L++         +E LKT++      I  +     I ++ R
Sbjct: 84  EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 143

Query: 200 RLKACIQNHGGHFE 241
           R++ C+Q +GGH E
Sbjct: 144 RVQVCLQRNGGHLE 157


>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +2

Query: 20  DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPR 199
           +W   SPDLNP D+ +W  L++         +E LKT++      I  +     I ++ R
Sbjct: 84  EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 143

Query: 200 RLKACIQNHG 229
           R++ C+Q +G
Sbjct: 144 RVQVCLQRNG 153


>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
          Length = 267

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +2

Query: 20  DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPR 199
           +W   SPDLNP D+ +W  L++         +E LKT++      I  +     I ++ R
Sbjct: 32  EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 91

Query: 200 RLKACIQNHG 229
           R++ C+Q +G
Sbjct: 92  RVQVCLQRNG 101


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +2

Query: 20  DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPR 199
           +W   SPDLNP D+ +W  L++         +E LKT++      I  +     I ++ R
Sbjct: 308 EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 367

Query: 200 RLKACIQNHG 229
           R++ C++ +G
Sbjct: 368 RVQVCLERNG 377


>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 254

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +2

Query: 20  DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPR 199
           +W   SPDLNP D+ +W  L++         +E LKT++      I  +     I ++ R
Sbjct: 84  EWAQHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 143

Query: 200 RLKACIQNH 226
           R++ C++ +
Sbjct: 144 RVQVCLERN 152


>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 153

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +2

Query: 20  DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPR 199
           +W   SPDLNP D+ +W  L++         +E LKT++      I  +     I ++ R
Sbjct: 84  EWVPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 143

Query: 200 RLKACIQNH 226
           R++ C++ +
Sbjct: 144 RVQVCLERN 152


>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 20  DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPR 199
           +W   SPDLNP D+ +W  L++         +E LKT++      I  +     I ++ R
Sbjct: 693 EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEELKTAITAKIRAIPKEECIKVIQNFAR 752

Query: 200 RLK 208
           R++
Sbjct: 753 RVQ 755


>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 47  NPLDYKIWQHLEEKACSKPHPN-LESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQN 223
           NP++  +W  ++E+    P P  + SLK+   KA  ++ +  +       P+RLK  I+ 
Sbjct: 199 NPIE-NLWSIIDEETYRDPQPRTMTSLKSRFKKAWRNVSLSTLSELSHSMPQRLKNVIKA 257

Query: 224 HGGH 235
            GGH
Sbjct: 258 KGGH 261


>SB_19248| Best HMM Match : HECT (HMM E-Value=7.2e-10)
          Length = 279

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 53  LDYKIWQHLEEKACSKPHPNLESLKTS 133
           LD   WQ LE+K C  P   +E+LK S
Sbjct: 225 LDLITWQELEKKVCGDPEITVEALKKS 251


>SB_34685| Best HMM Match : RNA_pol_A_bac (HMM E-Value=1.8)
          Length = 143

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -2

Query: 206 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLDWRR 27
           S+ A+S L Q  +G C  RRL     S VTP + ++       S  ++C   DS    +R
Sbjct: 32  SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSRGSPKR 86

Query: 26  ASLRA 12
            +LRA
Sbjct: 87  MTLRA 91


>SB_29477| Best HMM Match : Antistasin (HMM E-Value=9.2)
          Length = 73

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -2

Query: 206 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDS 45
           S+ A+S L Q  +G C  RRL     S VTP + ++      PS  ++C   DS
Sbjct: 10  SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTPSAKLACLQVDS 58


>SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 667 FDLMSSSVDLFPSTLHYHFH-TSPSHMHLLSTHTCP 771
           +D +  S+   P  LH+H H +SPS MHL ST   P
Sbjct: 798 YDYVCKSLPSSP-LLHHHQHPSSPSIMHLESTEASP 832


>SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -2

Query: 206 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTD----SNL 39
           S+ A+S L Q  +G C  RRL     S VTP + ++       S  ++C   D    S+ 
Sbjct: 380 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQPDSTPFSSG 434

Query: 38  DWRRAS 21
           DW RAS
Sbjct: 435 DWGRAS 440


>SB_49079| Best HMM Match : DUF1393 (HMM E-Value=5.8)
          Length = 299

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 26  PSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADID 160
           PSS+PD   +D+ +W  LEE+  +     +E  +      +A+ D
Sbjct: 83  PSSNPDSPIVDFDLWSELEEEVLNYVVETVEPTQEMFFVDSAEDD 127


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 338 FNVK*LKQVYSLYNHSYTKMNLIKHRFLDTKVIQNDLRDFEYRPSICAAS 189
           +++  LK   S Y+  + +  L KH  L  ++ + D  D   RP+ C AS
Sbjct: 322 YHIACLKLWTSCYSSQFKQDLLAKHAKLLLRLAEKDSLDTSSRPAFCTAS 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,544,283
Number of Sequences: 59808
Number of extensions: 472245
Number of successful extensions: 1396
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)