Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0868
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    36   3e-04
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 26  PSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRL 205
           P  SPDL P DY +++ L+     K   N + +K+ LI+  A+ +       I   P R 
Sbjct: 270 PPYSPDLAPSDYFLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLPERW 329

Query: 206 KACIQNHGGH 235
           +  I  +G H
Sbjct: 330 QKVIDQNGQH 339


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 170 VRAAIDDWPRRLK 208
           + AA+D+WPR L+
Sbjct: 400 ITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 170 VRAAIDDWPRRLK 208
           + AA+D+WPR L+
Sbjct: 453 ITAAVDEWPRLLR 465


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 700 PSTLHYHFHTSPSHMH 747
           PS  H H  +SP H H
Sbjct: 323 PSQYHPHRGSSPHHQH 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,440
Number of Sequences: 438
Number of extensions: 4981
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)