Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0868
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53770.1 68414.m06119 expressed protein                             30   2.0  
At3g53232.1 68416.m05866 expressed protein                             28   6.2  

>At1g53770.1 68414.m06119 expressed protein
          Length = 563

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 181 DRRLAAQIEGLYSKSRRSF*ITLVSKNLCFIKFILVYEWLYNE*TCFNYFTLNM 342
           ++R    +E L S+ RRSF + L  K   FI   +V   +Y      NYF++ +
Sbjct: 45  EQRPTFDVESLRSRLRRSFKLNLTKKQSIFIFLPIVIILIYLSTDFSNYFSVKV 98


>At3g53232.1 68416.m05866 expressed protein
          Length = 57

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 759 RREKMHVTRRCMEMVVQGRGEEVDRRR 679
           +R K ++  RC+ M+V GRG + +R R
Sbjct: 28  QRAKFYILGRCLAMLVCGRGRDRERDR 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,267
Number of Sequences: 28952
Number of extensions: 326292
Number of successful extensions: 795
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)