Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0866
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.8  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 138 SILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRTPWSTATSCG 284
           +I++ D+D +     EY +  Q   + +V N   +DK     +T  +CG
Sbjct: 72  NIISSDHDDSDE---EYAANSQPPRITSVPNTSRLDKSEISLATKQACG 117


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 6   KAPNKMKLLVVFAMCVLAASAGVVELSADSMSPSNQ 113
           KAP ++ + V+     L+ASA V+ LS+ S++   Q
Sbjct: 174 KAPAQIPVDVLVLTVTLSASAMVLGLSSYSLTEFQQ 209


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 534 QPVLEDEYVDLQLQRSG 584
           +PV+ +E VD  L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,367
Number of Sequences: 438
Number of extensions: 4055
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)