Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0866
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    32   0.34 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    32   0.34 
At5g66720.2 68418.m08411 5-azacytidine resistance protein -relat...    31   0.60 
At5g66720.1 68418.m08410 5-azacytidine resistance protein -relat...    31   0.60 
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    30   1.4  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    30   1.4  
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   1.8  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    29   2.4  
At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.6  
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f...    28   7.3  
At3g25590.1 68416.m03186 expressed protein                             28   7.3  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    28   7.3  
At4g21550.1 68417.m03113 transcriptional factor B3 family protei...    27   9.7  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +3

Query: 96  MSPSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRTPWS 266
           M   NQ  E +KL+  NS L+  Y  ++  S ++E+Q +  + QNV    ++DK RT  +
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQA 347

Query: 267 TATSCG 284
            + S G
Sbjct: 348 GSFSRG 353


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +3

Query: 96  MSPSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRTPWS 266
           M   NQ  E +KL+  NS L+  Y  ++  S ++E+Q +  + QNV    ++DK RT  +
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQA 348

Query: 267 TATSCG 284
            + S G
Sbjct: 349 GSFSRG 354


>At5g66720.2 68418.m08411 5-azacytidine resistance protein -related
           contains weak similarity to 5-azacytidine resistance
           protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
           pombe]
          Length = 411

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 84  SADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRTPW 263
           S D +      + D LYN  +TG   S+VR  L+ +   Q  I +      +  KR++P+
Sbjct: 324 SGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGLDPKGTAQ-KIAELARQRAVDKKRQSPF 382

Query: 264 STA 272
           +TA
Sbjct: 383 ATA 385


>At5g66720.1 68418.m08410 5-azacytidine resistance protein -related
           contains weak similarity to 5-azacytidine resistance
           protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
           pombe]
          Length = 414

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 84  SADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRTPW 263
           S D +      + D LYN  +TG   S+VR  L+ +   Q  I +      +  KR++P+
Sbjct: 327 SGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGLDPKGTAQ-KIAELARQRAVDKKRQSPF 385

Query: 264 STA 272
           +TA
Sbjct: 386 ATA 388


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 75  VELSADSMSPSN---QDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIID 245
           ++L+ D+ S  N   Q    K+Y  +L  +   AV++  ++ES G  +  Q  V  + + 
Sbjct: 283 LQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVA 342

Query: 246 KRRTPWSTATSCGSATDRIL 305
             R        C + T+R+L
Sbjct: 343 VHRNLLRLIGFCTTQTERLL 362


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 263 EYCYKLWVGNGQDIVKKYFPLSF 331
           EY  KL + +G D   KYFPL+F
Sbjct: 396 EYQLKLMIASGVDAANKYFPLAF 418


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +3

Query: 51  VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYD 161
           VLA + G  ELS    SP+ Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSP---SPAEQEIESFLYNAINMGFFD 103


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 130  SLSSRSWLEGLMLSADSSTTPALAASTHIAN 38
            S+S   WLEG  L  DS  T    A  HIAN
Sbjct: 1065 SVSFNPWLEGEALCVDSMITEQQDAQIHIAN 1095


>At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 495

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 302 YPVRCRPTACSSTPWCPSLVN 240
           YPV+C P A ++  W P  VN
Sbjct: 186 YPVKCLPHALAANMWLPVFVN 206


>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 16 (UBP16)
           [Arabidopsis thaliana] GI:11993477; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 731

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 713 SSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYWL 534
           SSS   L S+   K + S +  +G K     V+    PP +++       +D + F Y L
Sbjct: 256 SSSTLLLPSKANSKPKVSQASSSGLKTSVQKVVQHFRPPQSSKKSQPSSSIDEMSFSYEL 315

Query: 533 YLVLW 519
           ++ L+
Sbjct: 316 FVKLY 320


>At3g25590.1 68416.m03186 expressed protein
          Length = 423

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 329 SLMGSTF*QYPVRCRPTACSSTPWCPSLVNDQIVNYILND 210
           SL  ST  ++  R  P+  S    CP  +ND++VN + ++
Sbjct: 18  SLYYSTPSEFTCRKHPSVSSGVGICPYCLNDRLVNLVCSE 57


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 481 HYLVGEQQSDFKAHNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQW 633
           +Y + + Q+DF+AH +   +Y   S +T   ++     YG +SA   REQ+
Sbjct: 362 NYKMDQPQTDFRAHVSDQGRYACDSWNTPRDSSFSVDRYGLSSAPVEREQY 412


>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
           low similarity to SP|Q01593 Abscisic acid-insensitive
           protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
           protein homolog {Oryza sativa}; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 721

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -3

Query: 210 CCPGLGSRIPSSYVQHCRSHR*GCCCTVC---PRGLG*K-GSCC 91
           C    G  I  +  +H R HR GC C +C   P G+G K   CC
Sbjct: 545 CTEVEGLLISPTTTKHPR-HRDGCTCIICIQSPSGIGPKHDRCC 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,604
Number of Sequences: 28952
Number of extensions: 278667
Number of successful extensions: 728
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)