Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0830
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.29 
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   4.8  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.3  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   6.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   6.3  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.4  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 255 YNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 350
           YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 51  YNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 303 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 407
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 541 GRLERCNEPRVMSGRPATSPSCPTALRSP 455
           G L R   P   SGRP  SPS P+ L  P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPS-PSHLSIP 369


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 182 LNSSVGSSLPCGRTTECTSRSTTLIQPVLEDEYDD 286
           L S     L C R  E   R  T ++  L++EYDD
Sbjct: 190 LTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDD 224


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 163 RRRTSLIRGIGCGTELQSEVVVSVNDLDIVSGHDE 59
           R    L+R +G      SE+VVSVN LD++S  ++
Sbjct: 304 REHAYLLRALGI-----SEIVVSVNKLDLMSWSED 333


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 163  RRRTSLIRGIGCGTELQSEVVVSVNDLDIVSGHDES 56
            ++ T++  G  CG   +   VV +  LD V G DE+
Sbjct: 1105 KKETAINIGHSCGVIKEYSTVVVMGSLDGVEGSDET 1140


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 189 RQLEVHYLVGEQQSVLQDPQH*YNQYL 269
           R+   H+ VG ++  L+D QH + QY+
Sbjct: 289 RKQSNHFQVGARRLRLKDSQHSFEQYI 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,316
Number of Sequences: 5004
Number of extensions: 42550
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)