Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0830
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    31   0.92 
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    28   4.9  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   6.5  

>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = +3

Query: 375 YENDVLFFIYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLPDITRGSLHLSKRPKALL 554
           Y   V FF YN+ F+  + + T+V  +G+  ++G  G +  L D       +  + KA  
Sbjct: 764 YSGSVGFFSYNKTFDLNIVIRTVVLHNGE-ASIGAGGAIVALSDPEAEYNEMLLKAKAPT 822

Query: 555 YVHE*CNKRAF 587
            V E C+++ +
Sbjct: 823 KVVEECSQQIY 833


>08_02_1416 -
           26915306-26915459,26915553-26915668,26915798-26915910,
           26915995-26916130,26916219-26916338,26916472-26916648,
           26916790-26916862,26916948-26917083,26917179-26918055,
           26918138-26918331,26918438-26918620,26918730-26918796,
           26918900-26919092,26919317-26919363,26919478-26919574,
           26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +2

Query: 50  NFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERSSTAMV*TSILNSSVGSSLPCGRTTE 229
           NF +  + ++ K   +  NL   L    + S +  S A+  T+ L   +    PC   +E
Sbjct: 242 NFNIKESSSFAKKSDKGVNLIASLCEKYHTSEDELSKAIEKTNTLIVDILKKKPCPAASE 301

Query: 230 CTSRSTTLIQP 262
           C     + I P
Sbjct: 302 CQQDRLSFIDP 312


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 309 RVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNRQFNDALELG 437
           +  Y G++A   R  + W      Y  DVL F YN++++D   +G
Sbjct: 42  KTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,797
Number of Sequences: 37544
Number of extensions: 282530
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)