Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0830
         (598 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1305|AAF50525.3| 1571|Drosophila melanogaster CG7462-PB...    32   0.68 
BT010284-1|AAQ23602.1| 2727|Drosophila melanogaster LP05936p pro...    31   1.2  
AE014134-1818|AAF52899.1| 2727|Drosophila melanogaster CG5604-PA...    31   1.2  

>AE014296-1305|AAF50525.3| 1571|Drosophila melanogaster CG7462-PB,
            isoform B protein.
          Length = 1571

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 541  GRLERCNEPRVMSGRPATSPSCPTALRSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGW 362
            GR     EP+V  G P   P C   +  PEA  ++P S  + + R+    RTS   L+  
Sbjct: 1355 GRTLFMKEPKVAKGEPPQQPICILNIVLPEA--VIPDSTTAFSDRVTSAYRTSMFSLSKH 1412

Query: 361  KN 356
            +N
Sbjct: 1413 QN 1414


>BT010284-1|AAQ23602.1| 2727|Drosophila melanogaster LP05936p
           protein.
          Length = 2727

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 144 MREVLRRWCRQAY*TRQLEVHYLVGEQQSVLQD 242
           +R V+  W  Q+  T QL++H   G Q +VLQD
Sbjct: 803 LRLVVGNWVLQSQKTNQLQIHNTEGHQVTVLQD 835


>AE014134-1818|AAF52899.1| 2727|Drosophila melanogaster CG5604-PA
           protein.
          Length = 2727

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 144 MREVLRRWCRQAY*TRQLEVHYLVGEQQSVLQD 242
           +R V+  W  Q+  T QL++H   G Q +VLQD
Sbjct: 803 LRLVVGNWVLQSQKTNQLQIHNTEGHQVTVLQD 835


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,993,258
Number of Sequences: 53049
Number of extensions: 493554
Number of successful extensions: 1631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)