Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0830
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.56 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.3  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.0  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   3.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.2  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 586 NARLLHYS*TYNSAFGRLERCNEPRVMSGRPATSPSCPTALRSP 455
           N   +HY+  Y+S +GR +R        G  +   S P   +SP
Sbjct: 592 NQAAIHYNLPYSSLYGRFKRGKYEEPTVGEISQDGSSPHFHQSP 635


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 535 LERCNEPRVMSGRPATSPSCPTALRSPEAFTIVPSS 428
           L R NEP V+       P+C  AL     + +V SS
Sbjct: 165 LHRANEPVVLDDSKEEHPTC--ALDLTPTYAVVSSS 198


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 92  YRNYNLALKLGSTTNPSNERSSTAMV*TSILNSSV 196
           YR Y    K  S      ERS    + +S+LN+++
Sbjct: 278 YRKYRETSKERSRDRTERERSREPKIISSLLNNTI 312


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 92  YRNYNLALKLGSTTNPSNERSSTAMV*TSILNSSV 196
           YR Y    K  S      ERS    + +S+LN+++
Sbjct: 289 YRKYRETSKERSRDRTERERSREPKIISSLLNNTI 323


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 92  YRNYNLALKLGSTTNPSNERSSTAMV*TSILNSSV 196
           YR Y    K  S      ERS    + +S+LN+++
Sbjct: 289 YRKYRETSKERSRDRTERERSREPKIISSLLNNTI 323


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 92  YRNYNLALKLGSTTNPSNERSSTAMV*TSILNSSV 196
           YR Y    K  S      ERS    + +S+LN+++
Sbjct: 278 YRKYRETSKERSRDRTERERSREPKIISSLLNNTI 312


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 517 PRVMSGRPATSPSCPTALR 461
           PR+ S  P  S +CP  L+
Sbjct: 51  PRINSKSPLLSCACPDGLK 69


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 517 PRVMSGRPATSPSCPTALR 461
           PR+ S  P  S +CP  L+
Sbjct: 51  PRINSKSPLLSCACPDGLK 69


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 163  DGVDKHTELVSWK 201
            D +D+HT  V+WK
Sbjct: 986  DDLDQHTLKVTWK 998


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,745
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)