Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0830
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   1.8  
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b...    29   3.1  
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    28   4.1  
At3g13225.1 68416.m01660 WW domain-containing protein contains P...    28   5.4  
At4g18820.1 68417.m02778 expressed protein                             27   7.2  
At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329...    27   7.2  

>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -1

Query: 496 PATSPSCPTALRSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSALLPP 320
           P  S   P+A  S   ++++P  K  L+    +  + +F +L  WKN    V+ A++ P
Sbjct: 648 PVASSDMPSAEESDNVWSLIPQLKRKLH----LHQKKAFEFL--WKNLAGSVVPAMMDP 700


>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
           boundaries domain protein 13 (LBD13) identical to LOB
           DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
          Length = 268

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -1

Query: 517 PRVMSGRPATSPSCPTALRSPEAFTIVPSSKASLN 413
           PR++S +PA  P+ P +L SP   ++V SS +S N
Sbjct: 205 PRLLSSQPAPPPTPPVSLPSP---SMVVSSSSSSN 236


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = -1

Query: 496 PATSPSCPTAL----RSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSAL 329
           P ++PS P  L    R+P++ T +   K S N    + NR+S  Y+A  ++HC+ ++ +L
Sbjct: 3   PVSNPSSPEHLLKKSRTPDSTTSI-DRKNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59

Query: 328 L 326
           L
Sbjct: 60  L 60


>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
           profile PF00397: WW domain
          Length = 863

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 119 LGSTTNPSNERSSTAMV*TSILNSS--VGSSLPCGRTTECTSRSTTL 253
           +GS  +     SSTA V +S  N S  VGSS    ++T+ TS S+ L
Sbjct: 663 VGSANHHIPNNSSTAAVPSSRSNDSTEVGSSATASKSTDVTSGSSLL 709


>At4g18820.1 68417.m02778 expressed protein
          Length = 1111

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +2

Query: 20  QEIVRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGST---TNPSNE-RSSTAMV*TSILN 187
           Q +  KY P  FR ++  N V     N     KLG       P+   ++S A +    LN
Sbjct: 431 QSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALN 490

Query: 188 -SSVGSSLPCGRTTECTS 238
             S+    PCG  + C S
Sbjct: 491 CHSMEQPKPCGTCSSCVS 508


>At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 360

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
 Frame = +3

Query: 273 MSTTTCNCNSRDRVVYGGNSADSTREQW------FFQPAKYEN--DVLFFIYNR-QFNDA 425
           +ST++   +SR R   GGN A+ + E+W       +QP K  N  D++ +++   QF+  
Sbjct: 32  LSTSSTESSSRTRGGGGGNRAEKSSEEWPRPMEVPYQP-KIANSIDLIGYVHQPVQFDST 90

Query: 426 LE----LGTIVN--ASGDRKAVGHDGEVAGLPDITRGSL 524
           L+     GT+++   S D K+         +P +  G L
Sbjct: 91  LDGKFWAGTVISHEPSSDSKSESDSSSNFWIPVLFEGDL 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,857,226
Number of Sequences: 28952
Number of extensions: 223785
Number of successful extensions: 574
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)