Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0827
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   4.0  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    25   7.0  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.0  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   9.3  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.3  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 45  GKQPGYQVRGEHTVNCLTGLK-CLVSALYGRKRLHG 149
           GK+ GY V GE +++  T L+ C    L  R + HG
Sbjct: 655 GKEVGYSVHGEKSISKETLLEFCTTGLLLRRIQQHG 690


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 129 HREQILGTSVPSNSSPYAPPVPDILAV 49
           HRE    + +P  + PY   VP+I ++
Sbjct: 303 HREYFSASPIPVKTPPYVTAVPEIESI 329


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 252 QDSIGFIIIP*GDCNILSQYSLGNVTRLY 338
           + ++ F+ +  G  ++ S YS+GNV+R+Y
Sbjct: 22  EPNVSFLAVEEGPASLRS-YSIGNVSRIY 49


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 154 LALLMSVGDGDCLLSSETPASVYNG 228
           LAL++S+G+  C L +++  ++Y G
Sbjct: 115 LALILSLGEMCCFLPNQSSITMYTG 139


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 255 LENVRAVFIAIID*SRRLTR**AITIAHGHQQCQGRREAASYHREQILGTS 103
           LEN+R   I+     R L +   ++I HG   C   R  A ++    LGTS
Sbjct: 608 LENLRLGVISKPSQKRALMKVSDMSIRHGDCVCLFNRYRAQHNNALFLGTS 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,372
Number of Sequences: 5004
Number of extensions: 49929
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)