Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0827
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_51817| Best HMM Match : Avirulence (HMM E-Value=1.2)                28   7.4  
SB_3300| Best HMM Match : Activin_recp (HMM E-Value=0.15)              28   7.4  
SB_57978| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)                    27   9.8  
SB_17294| Best HMM Match : Avirulence (HMM E-Value=1.8)                27   9.8  

>SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 36  NSSGKQPGYQVRGEHTVNCLTG 101
           N + K PGY+++G+H  N LTG
Sbjct: 361 NLTRKYPGYELKGQHPENELTG 382


>SB_51817| Best HMM Match : Avirulence (HMM E-Value=1.2)
          Length = 643

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 247 RQSCFYRHYRLKQASHSIISNHHRPRTSTMPRAP*SRFLP*RADTRHFSPVKQFTVCSPR 68
           RQ   YRHY +  A  + I+        T+P    S +     D+ H + + Q TV + +
Sbjct: 460 RQCSLYRHYPIDSAHCTDITQQTVRTVQTLPNRQWSLYRHYPTDSAHCADITQQTVRTVQ 519

Query: 67  T 65
           T
Sbjct: 520 T 520


>SB_3300| Best HMM Match : Activin_recp (HMM E-Value=0.15)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 68  TGGAYGELFDGTEVPSICSLW*EAASRRPWHC 163
           TG  +G++FD   VP+  SLW   +   P  C
Sbjct: 16  TGCCHGDMFDNGTVPARDSLWPTGSRDEPASC 47


>SB_57978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 263 YAILRTSELFLSPL*TEAGVSLDNKQSPSPTDINNAKGAVKPLPTI 126
           Y +  TS +   PL +  G S     +PSP   +     + P+PTI
Sbjct: 36  YKLFSTSSMCDPPLPSPMGGSPKKSPAPSPRSSHGLSPRMSPIPTI 81


>SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)
          Length = 808

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 263 YAILRTSELFLSPL*TEAGVSLDNKQSPSPTDINNAKGAVKPLPTI 126
           Y +  TS +   PL +  G S     +PSP   +     + P+PTI
Sbjct: 671 YKLFSTSSMCDPPLPSPMGGSPKKSPAPSPRSSHGLSPRMSPIPTI 716


>SB_17294| Best HMM Match : Avirulence (HMM E-Value=1.8)
          Length = 771

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -2

Query: 247 RQSCFYRHYRLKQASHSIISNHHRPRTSTMPRAP*SRFLP*RADTRHFSPVKQFTVCSPR 68
           RQ   YRHY    A  + I+        T+P    S +     D+ H + + Q TV + +
Sbjct: 269 RQCALYRHYPTDSAHCTDIAQQTVVTVQTLPNRQCSLYRHYPTDSAHCADITQQTVFTVQ 328

Query: 67  T 65
           T
Sbjct: 329 T 329



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 247 RQSCFYRHYRLKQASHSIISNHHRPRTSTMPRAP*SRFLP*RADTRHFSPVKQFTVCSPR 68
           RQ   YRHY +  A  + I+        T+P    S +     D+ H + + Q TV + +
Sbjct: 397 RQCSLYRHYPIDSAHCTDITQQTVRTVQTLPNRQWSLYRHYPTDSGHCTDITQQTVRTVQ 456

Query: 67  T 65
           T
Sbjct: 457 T 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,283,440
Number of Sequences: 59808
Number of extensions: 378414
Number of successful extensions: 805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)