Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0827
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 171 GHQQCQGRREAASYHRE 121
           GHQ+ QG++ +AS + E
Sbjct: 33  GHQEMQGKQNSASLNSE 49


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 171 GHQQCQGRREAASYHRE 121
           GHQ+ QG++ +AS + E
Sbjct: 33  GHQEMQGKQNSASLNSE 49


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 171 GHQQCQGRREAASYHRE 121
           GHQ+ QG++ +AS + E
Sbjct: 33  GHQEMQGKQNSASLNSE 49


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 408 TYVRYLYCFIRTVCGHHPK 464
           TY  + Y    ++CG H K
Sbjct: 38  TYFHHTYIIYESLCGRHEK 56


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 408 TYVRYLYCFIRTVCGHHPK 464
           TY  + Y    ++CG H K
Sbjct: 38  TYFHHTYIIYESLCGRHEK 56


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 1   GHTQDHAPARPSTP 42
           GHT  H P  P TP
Sbjct: 460 GHTPHHHPHPPETP 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,163
Number of Sequences: 438
Number of extensions: 3902
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)