Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0826
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 27 2.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 2.8
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 26 2.8
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 26 3.7
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 25 6.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.6
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 25 8.6
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 25 8.6
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 25 8.6
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.6
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 25 8.6
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 263 SKIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPLTSTWSR 415
SK+ +H +Q N S D +T L + + P C + T SR
Sbjct: 41 SKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSR 91
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 263 SKIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPL 397
S + + + Q+ NT++ +S +S R +K + R + PPL
Sbjct: 8 SNLDRANAQLSNTSSTESSSSNNSSTASGSRHVKIESNRVSLPPL 52
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 281 SIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRA 385
SI +N+ + D +T+ +LAK + TPT R+
Sbjct: 232 SITRKNSIGMSTRSDESTAEKLAKAEVATPTNSRS 266
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 126 TVTRFVL*QRTYKKKCIESVLXXXXXXKTFLNLRLADRICS 4
TV +F TY KKC+ S+L K+ L L + ICS
Sbjct: 268 TVLQFNPIAPTYMKKCLGSILRKEGVPKSPKLLSLVENICS 308
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 104 YKTKRVTVSKYLGPVLYSFVEK-KKQHRILTDHCL 205
+KT +KY ++Y F EK +KQ I+ + C+
Sbjct: 70 FKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCI 104
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 93 TFSVIKQSV*RFQNILAQYCIPLSKKKNSIVY 188
TFS+++ ++ QNI ++Y P K +S V+
Sbjct: 606 TFSMVRGAINSLQNISSEYNFPGVKTSSSDVW 637
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 382 SATSWRFNGALCEAPRRCSVVGSGFSIRVLNLNGVFS 272
++T R NG L RR VG+ + L NG+ S
Sbjct: 114 TSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINS 150
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 217 KKIRLQTIHEKDKKIIKNPKTLHSNSEHEC*SRFRRQN 330
K I+ IH KD K+I+N + + HE S R N
Sbjct: 421 KNIKTPVIHWKDWKVIRNAE-IERGLRHESLSEKFRSN 457
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 24.6 bits (51), Expect = 8.6
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = +1
Query: 229 LQTIHEKDKKIIKNPKTLHSNSEHE 303
++ +HE+D K++ + H++ +HE
Sbjct: 93 MKALHERDMKLVMDLVLNHTSDQHE 117
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 145 SIVFLCRKKKTASYTDRPL-PLTENKKIRL 231
S + +K+KTASYT+ P+ P +K I L
Sbjct: 148 STAYQKQKRKTASYTNSPVTPPINDKNILL 177
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 221 KYVYRLYMRKTKK*SKIRKHSIQIQNTNAKAA 316
+YVY +MRK K+R ++ TN A+
Sbjct: 3 QYVYLKHMRKLWSLGKVRSTVLRFSTTNRNAS 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,614
Number of Sequences: 5004
Number of extensions: 45100
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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