Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0826
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0396 - 3128047-3128273,3128350-3128632,3128717-3128874,312...    31   0.70 
02_05_0277 - 27390783-27391153,27391229-27391507,27391580-273919...    29   1.6  
11_01_0384 - 2908789-2908991,2909104-2909464,2909574-2909731,290...    29   2.8  
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    28   5.0  
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206...    28   5.0  
10_08_0572 + 18860770-18860911,18861928-18862115,18862224-188624...    27   6.5  
12_02_0988 - 25064023-25064327,25064425-25064575,25064995-250652...    27   8.7  
02_01_0013 - 85332-85637                                               27   8.7  

>12_01_0396 -
           3128047-3128273,3128350-3128632,3128717-3128874,
           3129097-3129314,3129682-3129912,3130630-3130691
          Length = 392

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -1

Query: 444 RPAGLHREVKRDHVLVSGGHARRQVG 367
           +PA +HR++K D++ ++G H + ++G
Sbjct: 129 KPAIIHRDLKCDNIFINGNHGKVKIG 154


>02_05_0277 -
           27390783-27391153,27391229-27391507,27391580-27391970,
           27392042-27392199,27392755-27392975,27393059-27393286,
           27394231-27394268,27394616-27394693
          Length = 587

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 450 TPRPAGLHREVKRDHVLVSGGHARRQVGVL 361
           T +P  +HR++K D++ V+G H   ++G L
Sbjct: 144 THQPPIIHRDLKCDNIFVNGNHGEVKIGDL 173


>11_01_0384 -
           2908789-2908991,2909104-2909464,2909574-2909731,
           2909877-2910097,2910909-2911139,2911545-2911582,
           2911700-2911804
          Length = 438

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -1

Query: 444 RPAGLHREVKRDHVLVSGGHARRQVG 367
           +P  +HR++K D++ ++G H + ++G
Sbjct: 156 KPPIIHRDLKCDNIFINGNHGKVKIG 181


>06_03_1496 -
           30567968-30568210,30568345-30568513,30568635-30568736,
           30569087-30571855,30572402-30572430,30572546-30572659,
           30572735-30572846,30574730-30574845,30574928-30575068,
           30575121-30575243,30575346-30575478,30575842-30575972,
           30576065-30576300,30577073-30577376
          Length = 1573

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
 Frame = +2

Query: 272 RKHSIQIQNTNAKAASDDRTTSRRLAKRPI---KTPTCRRACPPLTSTWSRLTSRCSP 436
           R H+  I     +  +D  T S   A  P+   +TP  R   PP  S W R+     P
Sbjct: 28  RAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERVLLPIDP 85


>05_01_0269 +
           2062467-2062475,2063252-2063303,2063668-2063743,
           2064156-2064288,2064400-2064578,2065228-2065495,
           2066250-2066342,2066667-2066776,2066887-2066905,
           2066985-2067170
          Length = 374

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 266 KIRK-HSIQIQ---NTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPLTST 406
           KI+K  S+Q+Q   +T A+   D     R L   P  T +C R  PPL +T
Sbjct: 152 KIQKSESLQLQLAWSTPAQGFLDGSWLCRALLAPPFHTDSCSRLPPPLMAT 202


>10_08_0572 +
           18860770-18860911,18861928-18862115,18862224-18862463,
           18862554-18862775,18865772-18865982,18866113-18866210
          Length = 366

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 269 FLIIFLSFSCIVCRRIFLFSVRGNGLSVYDAV 174
           FL + L FS ++C   F+ +V GNG+ + + V
Sbjct: 129 FLGLVLQFSKLLCETDFIEAVNGNGIGLRNFV 160


>12_02_0988 -
           25064023-25064327,25064425-25064575,25064995-25065259,
           25065640-25065836
          Length = 305

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 480 PRRSEARQETTPRPAGLHREVKRDHVLVSGGHA 382
           P RS  R+ + P PAG      RD  LVSG  A
Sbjct: 28  PPRSRGRRPSLP-PAGCFHAAPRDAALVSGSAA 59


>02_01_0013 - 85332-85637
          Length = 101

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 263 SKIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPLTSTWS 412
           SKI    I+  N +  A++DD T+S  L      TPT  R+  P +ST S
Sbjct: 54  SKILSKVIEYCNKHVHASADDSTSSADLKN---WTPTSSRSTRPPSSTSS 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,036
Number of Sequences: 37544
Number of extensions: 286794
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)