Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0826
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38117| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         28   3.8  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_17060| Best HMM Match : DEAD_2 (HMM E-Value=3e-06)                  28   5.1  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     28   5.1  
SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)               27   6.7  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    27   6.7  
SB_1838| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_7576| Best HMM Match : JTB (HMM E-Value=2.8)                        27   8.9  

>SB_38117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 169 KKTASY--TDRPLPLTENKKIRLQTIHEKDKKIIKNPKTLHSNSEHEC*SRFRRQNNVSA 342
           K ++SY  T RP    E  + R  TIH    ++ +  KT  +NS  +   ++ R+++V  
Sbjct: 216 KSSSSYKPTTRPATAPEIPRPRSPTIHNMPSQVPEETKTGSTNS--DLYPKWFRKSSVYG 273

Query: 343 PRKAPH*NANLSPSMSATHEH 405
           PR+       L  S S T  H
Sbjct: 274 PRRPSTALIELQNSWSRTEAH 294


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 391 RTCSATSWRFNGALCEAPRRCS 326
           RT     W  NG+LC  PR CS
Sbjct: 922 RTLRTPGWNSNGSLCRGPRLCS 943


>SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +3

Query: 123 RFQNILAQYCIPLSKKKNSIVY*QTIASHGE*KNTSTDYT*ERQKNNQKSENTPFKFRTR 302
           ++ +  A Y + L KKK+     Q +  +    N S +    +Q NNQK+EN    F   
Sbjct: 252 KYDHATATYFL-LRKKKSQGERPQLLPKYSRTCNDSKE---NKQPNNQKNENEKEDFALP 307

Query: 303 MLKPLPTTEQRLGASQSAPL 362
             KPLP   +R   +   P+
Sbjct: 308 PPKPLPYKPKRAILNNVGPM 327


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 269 IRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPP 394
           IR    +I       A ++   + R+    ++ PTC R+CPP
Sbjct: 403 IRTQQNEITYNVTDPAGNENLCNFRVRVNDVEPPTCSRSCPP 444


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 393 HSRARGHV*LRDVVQQALESFLDALLIVEGAAQDGRLK 506
           H   RG+  L   V +A+E  LD L ++   A DG +K
Sbjct: 528 HYTPRGYALLATHVTEAIEGMLDELHVMRHMASDGDVK 565


>SB_17060| Best HMM Match : DEAD_2 (HMM E-Value=3e-06)
          Length = 242

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 169 KKTASYTDRPLPLTENKKIRLQTIHEKDKKIIKNPKT 279
           K      DR L L +NKK   ++  EKD K+ K  KT
Sbjct: 186 KSINQINDRCLELQKNKKECTESKKEKDGKVTKKKKT 222


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +1

Query: 169  KKTASYTDRPLPLTENKKIRLQTIHEKDKKIIKNPKTLHSNSEHEC*SRFRRQNNVSAPR 348
            KK+++ +   + LT  K + L T   K    +K+PK    ++ HE        ++ S+ +
Sbjct: 1117 KKSSNTSVNKIGLTPVKSLNL-THSTKADSGLKSPKVTSIHTSHEDSKVISTSSDHSSKK 1175

Query: 349  KAPH*NANLSPSMSATH 399
              P   ++L PS+  +H
Sbjct: 1176 SYPGIKSSLKPSVRISH 1192


>SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)
          Length = 224

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 303 MLKPLPTT--EQRLGASQSAPLKRQLVAEHVRHSRARGHV*LRDVVQQALES 452
           M    PTT    +L A   AP+KR  +   ++ +RA+    LRD+   A ES
Sbjct: 72  MENDFPTTIARHKLAAEIKAPVKR--IKSWLKQNRAKNRAQLRDLAPSASES 121


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 377  RRACPPLTSTWSRLTSRCSPAGLGV-VS*RASDRRG 481
            +RACP   S+WS  TS     G GV V  R+ ++ G
Sbjct: 894  QRACPSTWSSWSNWTSCSVSCGSGVQVRTRSCEKAG 929


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 136 SWPSIVFLCRKKKTASYTDRPLPLTENKKIRLQTIHEKDKKIIK 267
           SW S + +   K + S   RP+  T   K  L  I E+DK++++
Sbjct: 462 SWKSTMEVFMAKLSKSVERRPVSPTSFNKTALPRISEEDKQLVE 505


>SB_1838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 335 SRRLAKRPIKTPTCRRACPPLTSTWSRLTSRCS 433
           +RR+++R   TPTC    PP       ++ RCS
Sbjct: 4   TRRISRRSTTTPTCVSPPPPPLPRVGIVSRRCS 36


>SB_7576| Best HMM Match : JTB (HMM E-Value=2.8)
          Length = 261

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 149 LYSFVEKKKQHRILTDHCLSRRIKKYVYRLYMRK 250
           LYS    KK  R L  +C+ ++I++ +Y  YM K
Sbjct: 197 LYSNYMVKKIQRQLYSNCMVKKIRRQLYSNYMVK 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,059
Number of Sequences: 59808
Number of extensions: 347282
Number of successful extensions: 1053
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)