Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0826
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated... 33 0.12
AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated... 33 0.12
AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated... 33 0.12
AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical ... 32 0.27
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 28 3.4
U23527-2|AAP40525.1| 300|Caenorhabditis elegans Neuronal igcam ... 28 4.5
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ... 28 4.5
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 27 5.9
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 27 7.8
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 27 7.8
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 7.8
>AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated
protein 23, isoform b protein.
Length = 399
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 506 FETAILGCTLDDQKRVKKRLQGLLDYIAKLNVTTCS*VADMLGDK 372
F I+ C DDQKR+K+RL+ L+ I T AD++ D+
Sbjct: 357 FLKIIIQCAADDQKRIKRRLENLMSQIENAERTK----ADLMDDQ 397
>AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated
protein 23, isoform c protein.
Length = 457
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 506 FETAILGCTLDDQKRVKKRLQGLLDYIAKLNVTTCS*VADMLGDK 372
F I+ C DDQKR+K+RL+ L+ I T AD++ D+
Sbjct: 415 FLKIIIQCAADDQKRIKRRLENLMSQIENAERTK----ADLMDDQ 455
>AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated
protein 23, isoform a protein.
Length = 458
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 506 FETAILGCTLDDQKRVKKRLQGLLDYIAKLNVTTCS*VADMLGDK 372
F I+ C DDQKR+K+RL+ L+ I T AD++ D+
Sbjct: 416 FLKIIIQCAADDQKRIKRRLENLMSQIENAERTK----ADLMDDQ 456
>AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical
protein T23B12.5 protein.
Length = 224
Score = 31.9 bits (69), Expect = 0.27
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 387 HARRQVGVLMGRFARRRDVVLSSEAALAFVF*I*MECFRIFDYFFVFLMYS 235
H RR+V VL+G + ++ A F E F IF+Y +FL+Y+
Sbjct: 144 HGRRRVAVLLGLVVTLPTIFIAFIAHNVFCVKGAYEAFAIFEYLTIFLIYA 194
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +1
Query: 169 KKTASYTDRPLPLTENKKIRLQTIHEKDKKIIKNPKTLHSNSEHEC*SRFRRQNNVSAPR 348
K+T + P+ NK +H+K+K + + +H S R +NVS
Sbjct: 280 KQTKRRRSQKTPIQHNKNRTESRLHQKEKS--SSDEEVHEKSTSS------RHSNVSRSS 331
Query: 349 KAPH*NANLSPS 384
K+P+ N + +PS
Sbjct: 332 KSPYLNDDRAPS 343
>U23527-2|AAP40525.1| 300|Caenorhabditis elegans Neuronal igcam
protein 1, isoform b protein.
Length = 300
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 310 SRFRRQNNVSAPRKAPH*NAN-LSPSMSATHEHVVTFNF 423
SR + VS + APH NAN SP M+ + + V +N+
Sbjct: 169 SRTSHEMLVSYSQSAPHSNANSSSPQMNGSMQRVKAYNY 207
>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
protein 1, isoform a protein.
Length = 1147
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 310 SRFRRQNNVSAPRKAPH*NAN-LSPSMSATHEHVVTFNF 423
SR + VS + APH NAN SP M+ + + V +N+
Sbjct: 1016 SRTSHEMLVSYSQSAPHSNANSSSPQMNGSMQRVKAYNY 1054
>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
F33H2.5 protein.
Length = 2144
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +2
Query: 200 CLSRRIKKYVYRLYMRKTKK*SKIRKHSIQIQNTNAKAASDDRTTS------RRLAKRPI 361
C+S++I +YR+ + + I S+ + N +A S D+T+ R AKR +
Sbjct: 1947 CISQKISHRLYRIVNKMVHNNADIAHCSVYLANALCRALSCDQTSQLAVEGIRDNAKRLL 2006
Query: 362 KTPTCRRACPPLTST 406
PL ST
Sbjct: 2007 HNSVVEADMTPLRST 2021
>Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical
protein T24D5.5 protein.
Length = 408
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Frame = +2
Query: 230 YRLYMRKTKK*SKIRKH---SIQIQNTNA--------KAASDDRTTSRRLAKRPIKTPTC 376
++ Y RK K S+ +H S + N NA K ++DDR ++R A ++ +C
Sbjct: 304 WKRYQRKHKMGSEETRHFKGSSSLSNMNAQSSLMVCWKRSTDDRVNAQRFATSHLEHNSC 363
Query: 377 RRACPP 394
+ PP
Sbjct: 364 LESLPP 369
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 163 RKKKTASYTDRPLPLTENKKIRLQTIHEKDKKIIKNPKTLHSNSEHE 303
R KK++S + +N I L+ +K KII T+H + E+E
Sbjct: 815 RLKKSSSMNNSTYRGNKNTSISLEKGTQKALKIINRGTTIHEDDENE 861
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 236 LYMRKTKK*SKIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPLTSTWSR 415
LY T + I + + + ++ SD++ +RL K+ ++P RRA S
Sbjct: 940 LYDTDTNRDPSIGRSPMAVVGKRKESPSDEKKEKKRLKKKLSESPKIRRAAGSAQKDQSP 999
Query: 416 LTS 424
+T+
Sbjct: 1000 MTT 1002
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 236 LYMRKTKK*SKIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPLTSTWSR 415
LY T + I + + + ++ SD++ +RL K+ ++P RRA S
Sbjct: 660 LYDTDTNRDPSIGRSPMAVVGKRKESPSDEKKEKKRLKKKLSESPKIRRAAGSAQKDQSP 719
Query: 416 LTS 424
+T+
Sbjct: 720 MTT 722
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical
protein C53B4.4c protein.
Length = 1304
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 236 LYMRKTKK*SKIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPLTSTWSR 415
LY T + I + + + ++ SD++ +RL K+ ++P RRA S
Sbjct: 660 LYDTDTNRDPSIGRSPMAVVGKRKESPSDEKKEKKRLKKKLSESPKIRRAAGSAQKDQSP 719
Query: 416 LTS 424
+T+
Sbjct: 720 MTT 722
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical protein
C53B4.4b protein.
Length = 1586
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 236 LYMRKTKK*SKIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPLTSTWSR 415
LY T + I + + + ++ SD++ +RL K+ ++P RRA S
Sbjct: 940 LYDTDTNRDPSIGRSPMAVVGKRKESPSDEKKEKKRLKKKLSESPKIRRAAGSAQKDQSP 999
Query: 416 LTS 424
+T+
Sbjct: 1000 MTT 1002
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical protein
C53B4.4a protein.
Length = 1584
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 236 LYMRKTKK*SKIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRACPPLTSTWSR 415
LY T + I + + + ++ SD++ +RL K+ ++P RRA S
Sbjct: 940 LYDTDTNRDPSIGRSPMAVVGKRKESPSDEKKEKKRLKKKLSESPKIRRAAGSAQKDQSP 999
Query: 416 LTS 424
+T+
Sbjct: 1000 MTT 1002
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,039,404
Number of Sequences: 27780
Number of extensions: 268530
Number of successful extensions: 907
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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