Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0826
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z... 32 0.26
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 28 3.1
At1g55870.1 68414.m06407 CAF1 family ribonuclease contains Pfam ... 28 3.1
At1g49160.2 68414.m05512 protein kinase family protein contains ... 28 3.1
At1g49160.1 68414.m05511 protein kinase family protein contains ... 28 3.1
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 28 4.2
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 28 4.2
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 27 5.5
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 27 5.5
At3g21350.1 68416.m02696 RNA polymerase transcriptional regulati... 27 5.5
At3g18750.1 68416.m02380 protein kinase family protein contains ... 27 5.5
At3g03540.1 68416.m00355 phosphoesterase family protein similar ... 27 7.3
At3g03470.1 68416.m00345 cytochrome P450, putative similar to cy... 27 7.3
At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger) fa... 27 7.3
At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger) fa... 27 7.3
At1g50560.1 68414.m05673 cytochrome P450, putative similar to CY... 27 7.3
At5g34860.1 68418.m04105 hypothetical protein 27 9.6
>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 262
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 483 HPRRSEARQETTPRPAGLHREVKRDHVLVSGGHARRQVGVLM 358
H RS AR +TT +RE +++H SGGH G M
Sbjct: 64 HAPRSYARPQTTSPGKARYRECQKNHAASSGGHVVDGCGEFM 105
>At4g32820.1 68417.m04668 expressed protein ; expression supported by
MPSS
Length = 1817
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 211 ENKKIRLQTIHEKDKKIIKNPKTLHSNS 294
+NK L+TI+EK +K KNPK +S S
Sbjct: 1550 DNKVETLETINEKIRKRFKNPKLSNSFS 1577
>At1g55870.1 68414.m06407 CAF1 family ribonuclease contains Pfam
domain, PF04857: CAF1 family ribonuclease
Length = 584
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 173 KQHRILTDHCLSRRIKKYVYRLYMRKTK 256
KQH L D + +++KY+ RLY+ T+
Sbjct: 479 KQHSQLDDFAQNEKLEKYINRLYLSWTR 506
>At1g49160.2 68414.m05512 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 441 PAGLHREVKRDHVLVSGGHARRQVGVL 361
P +HR++K D++ ++G H ++G L
Sbjct: 150 PPIIHRDIKCDNIFINGNHGEVKIGDL 176
>At1g49160.1 68414.m05511 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 539
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 441 PAGLHREVKRDHVLVSGGHARRQVGVL 361
P +HR++K D++ ++G H ++G L
Sbjct: 132 PPIIHRDIKCDNIFINGNHGEVKIGDL 158
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 95 VLCYKTKRVTVSKYLGPVLYSFVEKKKQHRILTDHCLSRRIKKYVYRLY 241
+L + KR T S+YL + +FV L+ + ++ + Y+Y LY
Sbjct: 791 ILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNDQSYLYELY 839
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 95 VLCYKTKRVTVSKYLGPVLYSFVEKKKQHRILTDHCLSRRIKKYVYRLY 241
+L + KR T S+YL + +FV L+ + ++ + Y+Y LY
Sbjct: 791 ILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNDQSYLYELY 839
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 95 VLCYKTKRVTVSKYLGPVLYSFVEKKKQHRILTDHCLSRRIKKYVYRLY 241
+L + KR T S+YL + +FV L+ + ++ + Y+Y LY
Sbjct: 792 ILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNGQSYLYELY 840
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 494
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 33 LKMFFFYFFISKHSLYISS 89
L +FFF+FF HSL ISS
Sbjct: 12 LLLFFFFFFEISHSLSISS 30
>At3g21350.1 68416.m02696 RNA polymerase transcriptional regulation
mediator-related contains weak similarity to RNA
polymerase transcriptional regulation mediator, subunit
6 homolog (Activator-recruited cofactor 33 kDa
component) (ARC33) (NY-REN-28 antigen)
(Swiss-Prot:O75586) [Homo sapiens]
Length = 257
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 376 TSWRFNGALCEAPRRCSVVGSGFSIRVLNLNGVFSD 269
T + +G++ +AP+ CSV + S + N++ F+D
Sbjct: 123 TYYILDGSIYQAPQLCSVFAARVSRTIYNISKAFTD 158
>At3g18750.1 68416.m02380 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 567
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 441 PAGLHREVKRDHVLVSGGHARRQVGVL 361
P +HR++K D++ ++G H ++G L
Sbjct: 150 PPIIHRDLKCDNIFINGNHGEVKIGDL 176
>At3g03540.1 68416.m00355 phosphoesterase family protein similar to
SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3)
{Mycobacterium tuberculosis}; contains Pfam profile
PF04185: Phosphoesterase family
Length = 521
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 89 LYVLCYKTKRVTVSKYLGPVLYSFVEKKKQHR 184
LY LC KT SKY+ FVE+ K+ R
Sbjct: 451 LYKLCKKTCVSDASKYVTKAFDKFVEESKKAR 482
>At3g03470.1 68416.m00345 cytochrome P450, putative similar to
cytochrome P450 89A2 GB:Q42602 [Arabidopsis thaliana]
Length = 511
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 222 FFILRERQWSVSIRCCFFFSTKEYNTGPRYFETVTRFV 109
F I+ +S+ ++ FFFST + GP F + +
Sbjct: 8 FLIISSLTFSIFLKLIFFFSTHKLPPGPPRFPVIGNII 45
>At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 546
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 334 VSAPRKAPH*NANLSPSMSATHEHVVTF-NFAM*SSRPWS 450
VS P P N+ + P+ SA HE+ VTF + + +S+ WS
Sbjct: 87 VSGPSHDPSVNSTV-PTFSAPHENYVTFASSSSYNSQTWS 125
>At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 546
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 334 VSAPRKAPH*NANLSPSMSATHEHVVTF-NFAM*SSRPWS 450
VS P P N+ + P+ SA HE+ VTF + + +S+ WS
Sbjct: 87 VSGPSHDPSVNSTV-PTFSAPHENYVTFASSSSYNSQTWS 125
>At1g50560.1 68414.m05673 cytochrome P450, putative similar to
CYTOCHROME P450 93A3 (P450 CP5) (SP:O81973) [Glycine
max]
Length = 519
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 77 IHFFLYVLCYKTKRVTVSKYLGPVLY 154
+HF L V CYK+ + SKY GP L+
Sbjct: 56 LHFLLSVPCYKSFQKLSSKY-GPFLH 80
>At5g34860.1 68418.m04105 hypothetical protein
Length = 394
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 338 RRLAKRPIKTPTCRRACPPLTSTWSRLTSRCSPAGLGVV 454
+RL+KR KT TC+ PP L + C A G V
Sbjct: 233 KRLSKRRDKTATCKTKFPP--HIMEILEANCKSAKFGYV 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,395
Number of Sequences: 28952
Number of extensions: 232394
Number of successful extensions: 724
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -