Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0824
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   1.9  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   4.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.9  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   7.8  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 492 LWTRLTNALE---IKSTKLSTNTTYYNIILKLADPANVVLP*IRFLGKF 629
           LW R TN +    I  T  ++N +++N  L  A  A+V+L  I FLG F
Sbjct: 163 LWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEATFADVLLTIISFLGVF 211


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 541 DNLVLLISSAFVSLVHRYNLPSFWPDLFN 455
           +NL+ + ++  VS + R + P+ WP LF+
Sbjct: 98  ENLLSIQNALVVSRIARLDYPTEWPSLFH 126


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 634 VEKKTSLNYIIPHYNQKIKLS 696
           V K  S   +IPHY +KI LS
Sbjct: 812 VPKMPSFTVLIPHYGEKILLS 832


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 544 VDNLVLLISSAFVSLVHRYNLPSFW 470
           + N  +++S  F+   HR+N+P FW
Sbjct: 264 IKNRDVVLSGKFLRF-HRFNIPGFW 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,729
Number of Sequences: 5004
Number of extensions: 54620
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)