Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0824
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       30   1.6  
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 438  PNH*NPLKRSGQKLGRLYLWTRLTNALEIKSTKLSTNTTYYNIIL 572
            P+H  P +R G K  R  L T  ++ LE+ S  L T+T+ + + +
Sbjct: 1228 PSHMTPARREGTKFARRVLLTTWSSVLEVLSLPLETSTSAFIVAM 1272


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -2

Query: 314  VNKVNSHHFSNVISFELFTFFI----LYSNSLHFMSFDELPSN*FQINQLHFIL 165
            +N +N   + + ++F +F+ FI      +N+  + +F  LP+  + +N LH  L
Sbjct: 1314 INSINPIQYDHKLNFTMFSLFIPQFYTLTNNGQYSAFFHLPTTGYLLNSLHSFL 1367


>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1076

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 439  PTIEIH*KDPARNSVDYICGLG*QMHLKLKALN 537
            P +E H   P R ++DY  G+G  M  +LK  N
Sbjct: 1027 PILEDHIVSPVRKALDYYVGMGQTMETELKKKN 1059


>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 186  KSTSFYSAPFYFLHEKVFTTKYMKQICLKRLDSKFVSYC-ARC 61
            +S +F  +   +L +++F  +Y K++C+ R D   V YC A C
Sbjct: 1077 RSQAFAESFHRWLAQRLFRAQYSKELCV-RQDKPRVGYCSANC 1118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,011
Number of Sequences: 59808
Number of extensions: 355638
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)