Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0824
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97000-6|AAC47992.2| 134|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear recep... 28 5.5
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 28 5.5
Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 28 7.3
Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical pr... 28 7.3
U00040-5|AAA50666.1| 934|Caenorhabditis elegans Hypothetical pr... 28 7.3
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 28 7.3
>U97000-6|AAC47992.2| 134|Caenorhabditis elegans Hypothetical
protein F21F8.2 protein.
Length = 134
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 201 QLISDKSTSFYSAPFYFLHEKVFT 130
Q+++D TSF +APFY L+E + T
Sbjct: 17 QVMTDTGTSFIAAPFYVLNEIIVT 40
>Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical
protein F57A10.5 protein.
Length = 443
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 KKVNSSNEMTLEKWWEFTLFTTVEFFRTLFF 345
K +S + +++W+ + L TTVE+ +T F
Sbjct: 243 KPRDSQHSQNIKQWFFYNLLTTVEYAKTFMF 273
>Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical
protein R11A5.4b protein.
Length = 582
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 141 KVFTTKYMKQICLKRLDSKFVSYCAR-CKVICRMTTQ-MFIFYFI 13
K+F +++ + LKR +S+ +Y R ++I R++ +F+ +FI
Sbjct: 538 KIFQNQFVPRWMLKRRESRHCNYYTRFSRIISRLSNSFLFVLFFI 582
>AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear receptor
NHR-60 protein.
Length = 442
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 KKVNSSNEMTLEKWWEFTLFTTVEFFRTLFF 345
K +S + +++W+ + L TTVE+ +T F
Sbjct: 242 KPRDSQHSQNIKQWFFYNLLTTVEYAKTFMF 272
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -2
Query: 479 EFLAG-SFQWISMVG-LGKF-SQLKPVTSATLSDFAGISSLGYQQLGMKKRVLKNSTVVN 309
E LAG +W + G +G F + +KPV S LSD++GI G+K + S +++
Sbjct: 703 EALAGLENEWKRIKGEVGTFINSVKPVNSTKLSDYSGIFQAAKSVNGLKTNL---SAIIS 759
Query: 308 KVNS 297
V +
Sbjct: 760 SVET 763
>Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical
protein Y53C12B.5b protein.
Length = 276
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 302 NSHHFSNVISFELFTFFILYSN-SLHF 225
NS FS + F LFT F+++SN +HF
Sbjct: 170 NSMIFSYFLEFSLFTNFVIFSNFFIHF 196
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 286 EKWWEFTLFTTVEFFRTLFF 345
++W F LFTTVE+ +T F
Sbjct: 259 KQWMYFNLFTTVEYAKTFMF 278
>Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical
protein C43C3.2 protein.
Length = 498
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = -2
Query: 377 ISSLGYQQLGMKKRVLKNSTVVNKVNSHHFSNVISFELFTFFILYSNSLHFM 222
++ G Q+L M ++V + V+ +++ + + + ELF F LYS L ++
Sbjct: 221 VTFFGLQELVMHEKVDLDQEVITRMHLYKCVDDLGRELFVVFTLYSFVLAYL 272
>U00040-5|AAA50666.1| 934|Caenorhabditis elegans Hypothetical
protein C18H2.4 protein.
Length = 934
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +3
Query: 486 LYLWTRLTNALEIKSTKLSTNTTYYNIILKLADPANVVLP*IRFLGKFSCRKKNLTQL 659
L + +R+TNA+ +++ + + N+I +L + AN VL F F+ +KNL ++
Sbjct: 47 LAIMSRITNAISLQAAAIRDSVNIRNVITELLE-ANTVL----FSDLFNYDEKNLLKI 99
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 286 EKWWEFTLFTTVEFFRTLFF 345
++W F LFTTVE+ +T F
Sbjct: 259 KQWMYFNLFTTVEYAKTFMF 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,907,799
Number of Sequences: 27780
Number of extensions: 297673
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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