Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0824
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29060.1 68414.m03557 expressed protein                             31   0.55 
At4g14600.1 68417.m02246 expressed protein                             31   0.73 
At1g18740.1 68414.m02337 expressed protein                             29   2.2  
At3g16030.1 68416.m02027 lectin protein kinase family protein co...    28   5.1  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    28   5.1  
At2g15610.1 68415.m01788 expressed protein                             27   9.0  

>At1g29060.1 68414.m03557 expressed protein
          Length = 134

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 356 QLGMKKRVLKNSTVVNKVNSHHFSNVISFELFTFFILYSNSLHF 225
           Q G+K  + K +  + +  ++H  +V+ F L  FFILY  S  F
Sbjct: 89  QAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFILYMWSKMF 132


>At4g14600.1 68417.m02246 expressed protein
          Length = 137

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 356 QLGMKKRVLKNSTVVNKVNSHHFSNVISFELFTFFILY 243
           Q G+K  + K +  + +  ++H  +V+ F L  FF+LY
Sbjct: 92  QAGVKNNIRKLNMSIIRSGNNHIMHVVLFALLVFFVLY 129


>At1g18740.1 68414.m02337 expressed protein
          Length = 382

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 392 SDFAGISSLGYQQLGMKKRVLKNSTVVNKVNSHHFSNVISFELFTF 255
           +DF G  S G   L +++  + +STVV+  +SHH  + +  EL +F
Sbjct: 4   TDFQG--SFGRSLLSLRRDQVDSSTVVSGSSSHHEPSTMEVELDSF 47


>At3g16030.1 68416.m02027 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 850

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 441 NH*NP-LKRSGQ----KLGRLYLWTRLTNALEIKSTKLSTNTTYYNIILKLADPANVVL 602
           N  NP L RSG      LGRL +    ++ LE+ ST+ + NTT     LKL D  N+ L
Sbjct: 78  NRNNPVLGRSGSLTVDSLGRLRILRGASSLLELSSTETTGNTT-----LKLLDSGNLQL 131


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 553 VVFVDNLVLLISSAFVSLVHRYNLPSFWP 467
           VVF  +  L ++  F SL+H+ N PS +P
Sbjct: 831 VVFSADRTLTVNKQFASLLHKENFPSEFP 859


>At2g15610.1 68415.m01788 expressed protein
          Length = 185

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 323 STVVNKVNSH--HFSNVISFELFTFFILY 243
           +T+VNKV S   HF N+I   LF    LY
Sbjct: 115 TTIVNKVMSEEWHFCNIIVKRLFQLMFLY 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,895
Number of Sequences: 28952
Number of extensions: 257083
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)