Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0823
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38) 55 3e-08
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.78
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34) 29 1.8
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 28 3.1
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_11961| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_5592| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_7319| Best HMM Match : SRCR (HMM E-Value=0) 27 5.5
SB_49586| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_13723| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_11350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
Length = 253
Score = 54.8 bits (126), Expect = 3e-08
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = -3
Query: 276 ARIPGDAVLSADHDDRVVPLHSLKFVAELQHVAGRSPAQ 160
A+ P +L+ADHDDRVVPLHS KF+AELQHV G Q
Sbjct: 173 AQYPPLMLLTADHDDRVVPLHSFKFIAELQHVMGSQDNQ 211
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 317 YSPLHNIQPPSENRPEYP 264
YSPLHNI+ P +N +YP
Sbjct: 160 YSPLHNIKVP-DNGAQYP 176
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 146 SSGARCAGERPATCCSSATNFSECSGTTRSSWSADSTASPGIRADSRSAAEC 301
+ + C G ++ C T SEC G T+SS T S + ++S +EC
Sbjct: 911 TQSSECKGVTQSSECKGVTQASECKGVTQSSECKSVTQSSECKGVTKS-SEC 961
Score = 30.3 bits (65), Expect = 0.78
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 146 SSGARCAGERPATCCSSATNFSECSGTTRSSWSADSTASPGIRADSRSAAEC 301
+ + C G ++ C T+ SEC G T+SS T S + ++S +EC
Sbjct: 875 TQSSECKGITQSSECKGVTHSSECKGVTQSSECKGVTQSSECKGVTQS-SEC 925
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 146 SSGARCAGERPATCCSSATNFSECSGTTRSSWSADSTASPGIRADSRSAAEC 301
+ + C G ++ C T SEC G T++S T S ++ ++S +EC
Sbjct: 902 TQSSECKGVTQSSECKGVTQSSECKGVTQASECKGVTQSSECKSVTQS-SEC 952
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 146 SSGARCAGERPATCCSSATNFSECSGTTRSSWSADSTASPGIRADSRSAAEC 301
+ + C G ++ C T SEC G T SS T S + ++S +EC
Sbjct: 866 TQSSECKGITQSSECKGITQSSECKGVTHSSECKGVTQSSECKGVTQS-SEC 916
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 31.1 bits (67), Expect = 0.45
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = +2
Query: 110 PPPCPALVSNLASSGARC-AGERPATCCSSATNFSECSGTTRSS--WSADSTASPGIRAD 280
P PCP + +L ++ C A +C A + CSG T S W+ T G
Sbjct: 102 PVPCPTGMYSLGAASMNCTACPAGFSCSDPAAPPAACSGATYSEAMWTECKTCPAGYSCP 161
Query: 281 SRSAAECC 304
+ E C
Sbjct: 162 GNARKELC 169
>SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 104 GFPPPCPALVSNLASSG-ARCAGERPATCCSSATNFSECSG 223
G+P PAL ++L++ + C G R +CCSS S+ G
Sbjct: 176 GYPHYKPALAASLSTRALSSCPGSRDCSCCSSLYPGSQSIG 216
>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
Length = 686
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 167 GERPATCCSSATNFSECSGTTRSSWSADSTASPG 268
GERP + E + TTR SWS + T+ G
Sbjct: 79 GERPQQSKGTIVRIKEHTATTRGSWSMEVTSVKG 112
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 168 PAQRAPLLARFDTKAGHGGGKPTTKIIDE 82
P + P L R +AGHGG TK++++
Sbjct: 620 PKGKRPFLYRGGRRAGHGGAAEFTKLLED 648
>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2630
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 182 TCCSSATNF--SECSGTTRSSWSADSTASPGIRADSRSAA 295
T C++AT S CS +T S+ SA++TA+P + S A
Sbjct: 501 TSCANATAAPNSNCSLSTNSTASANTTAAPDSKCSLSSEA 540
>SB_11961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +2
Query: 98 VVGFPPPCPALVSNLASSGARCAGERPATCCSSATNFSECSG 223
VV +P P P+L+ + + RC G C + C G
Sbjct: 50 VVRYPSPRPSLICDGLADVVRCDGLADVVRCDGLADVVRCDG 91
>SB_5592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 173 RPATCCSSATNFSECSGTTRSSWSADSTASPGIRADSRS 289
RPA C + C G +R+SW+ S SRS
Sbjct: 48 RPADTCGQRCMDTYCKGWSRTSWTRTSPTMSNTSCFSRS 86
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 44 PKACVMKHRISVCSSIILVVGFPPP-CPALVSNLASSGARCAGERPATCCSSATNFSEC 217
P+AC+ K S C S + PP CP S C + P CC +++ +EC
Sbjct: 1774 PEACLTKCLPS-CPSTCCIKNSPPVVCPK------SCETTCTPDCPVMCCKNSSPATEC 1825
>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 119 CPALVSNLAS-SGARCAGERPATCCSSATNFSECSGT 226
C + SN+ S +G+ PA+C SSA + CS T
Sbjct: 979 CSSRTSNITSFTGSSGYSSMPASCPSSANSHRSCSPT 1015
>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
Length = 957
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 146 SSGARCAGERPATCCSSATNFSECSGTTRSSWSADSTASP 265
SS A A+ ++A S+CS +T ++ SA++TA+P
Sbjct: 567 SSNCSLATNATASANTTAAQNSDCSLSTNATASANTTAAP 606
>SB_49586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 346 LSELP*SDTQACPIVNFWKRTMSRTPT 426
L E+ CPIV+ W RTPT
Sbjct: 8 LEEIALEGLDGCPIVHLWDLLKQRTPT 34
>SB_13723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 195 ELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIIDEH 79
EL GRS +P L FDTK K ++ + D+H
Sbjct: 4 ELHRGGGRSRTSGSPGLQEFDTKNQPFASKSSSGVGDDH 42
>SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 336 VRVLAEVLALTQHSAAERESARIPGDAV 253
VR L+E Q +RE+ R PGDAV
Sbjct: 232 VRCLSEHSVFVQSYYLDREAGRCPGDAV 259
>SB_11350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +2
Query: 59 MKHRISVCSSIILVVGFPPPCPALVSNLASSGARCAGERPATCCSSATNFSE 214
MKH S + + PP P SN S G ERP SS + +SE
Sbjct: 1 MKHFTDTLISANIWCSYSPP-PVFTSNSCSPGDPLVLERPPPRWSSNSPYSE 51
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,877
Number of Sequences: 59808
Number of extensions: 238694
Number of successful extensions: 770
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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