Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0823
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily ass...    31   0.30 
U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily ass...    31   0.30 
AF016680-2|AAB66164.2|  253|Caenorhabditis elegans Hypothetical ...    31   0.52 
AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans Phosphodieste...    29   1.6  
AC024877-3|AAF60898.1|  760|Caenorhabditis elegans Phosphodieste...    29   1.6  
AF025464-5|AAB71013.2|  127|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z82093-1|CAB05018.1|  229|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    27   4.8  
Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    27   4.8  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    27   4.8  
Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical...    27   6.4  
AF025464-6|AAB71012.2|  376|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z66519-10|CAD59139.1|  446|Caenorhabditis elegans Hypothetical p...    27   8.4  
Z66519-9|CAA91380.1|  448|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    27   8.4  
L16621-9|AAL11487.1|  568|Caenorhabditis elegans Temporarily ass...    27   8.4  

>U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform a protein.
          Length = 462

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 170 ERPATCCSSATNFSECSGTTRSSWSADST 256
           +RP +  S+ +N S CS +TR S S DST
Sbjct: 385 QRPKSWASTVSNESSCSSSTRESDSTDST 413


>U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform b protein.
          Length = 638

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 170 ERPATCCSSATNFSECSGTTRSSWSADST 256
           +RP +  S+ +N S CS +TR S S DST
Sbjct: 561 QRPKSWASTVSNESSCSSSTRESDSTDST 589


>AF016680-2|AAB66164.2|  253|Caenorhabditis elegans Hypothetical
           protein R12A1.3 protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = +2

Query: 74  SVCSSIILVVGFPPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSWSADS 253
           S+CS + L VG     PA+     +S  RC     + C  +A NF   S    +   +  
Sbjct: 145 SICS-LPLAVG-SCTAPAVRFYYDASSGRCNQFMYSGCGGNANNFQSLSSCQGTCGQSGV 202

Query: 254 TASPGIRADSRSAAEC 301
           T +P   AD+ S   C
Sbjct: 203 TGTPACPADANSGLNC 218


>AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoformb protein.
          Length = 697

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 380 HAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATL 255
           HA V    ++D    FEYL K++ +H    P E R     T+
Sbjct: 606 HAMVEMVLATDISRHFEYLAKFNKMHVTDVPEEQRDTNSLTI 647


>AC024877-3|AAF60898.1|  760|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoforma protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 380 HAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATL 255
           HA V    ++D    FEYL K++ +H    P E R     T+
Sbjct: 606 HAMVEMVLATDISRHFEYLAKFNKMHVTDVPEEQRDTNSLTI 647


>AF025464-5|AAB71013.2|  127|Caenorhabditis elegans Hypothetical
           protein F53G2.3 protein.
          Length = 127

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = -3

Query: 318 VLALTQHSA-AERESARIPGDAVLSAD--HDDRVVPLHSLKFVAELQHVAGRSPAQRAPL 148
           +L +  H A ++R  A    D V +A+  +++     H L +  EL+  A  +P   A L
Sbjct: 6   ILLICAHCAFSDRLDAGSQADCVAAANKIYNNEWGFDHKLVYDKELEPFAAETPCGIAYL 65

Query: 147 LARFDTKAGHGGGKPTTKIIDEHTDILCFMTQALGLK 37
                 + G GG   +  + +EHT I C   +  G++
Sbjct: 66  QNGL-AEVGSGGAHTSVNLREEHTRIACVPKKCGGVE 101


>Z82093-1|CAB05018.1|  229|Caenorhabditis elegans Hypothetical
           protein ZK39.2 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 146 SSGARCAGERPATCCSSATNFSECSGTTRSSWSADSTAS 262
           SSG    G R  T C+     + CS T+   W+ DS+AS
Sbjct: 120 SSGGIWLGARRTTACAKQHKTTSCSTTSSFRWT-DSSAS 157


>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 110 PPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSW 241
           PPP P LV+  A+ GA C       C       + C G     W
Sbjct: 18  PPPSPPLVNEKAAIGALCVVCGDRACSHLYYGVAACHGCKCFFW 61


>Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical
           protein ZK39.3 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 149 SGARCAGERPATCCSSATNFSECSGTTRSSWSADSTA-SPGIRADSR 286
           SG+   G R    C + +  S+C+ T   +W+  ST+ + G   DSR
Sbjct: 103 SGSVWIGARRTDACMTKSITSDCTATNSFTWTDGSTSGTAGFVWDSR 149


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 110 PPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSW 241
           PPP P LV+  A+ GA C       C       + C G     W
Sbjct: 18  PPPSPPLVNEKAAIGALCVVCGDRACSHLYYGVAACHGCKCFFW 61


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 110 PPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSW 241
           PPP P LV+  A+ GA C       C       + C G     W
Sbjct: 18  PPPSPPLVNEKAAIGALCVVCGDRACSHLYYGVAACHGCKCFFW 61


>Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical
           protein C34B4.2a protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 143 ASSGARCAGERPATCCSSATNFSECSGTTRSSWSA 247
           ASSG   AG   AT    + + SECS T+ SS S+
Sbjct: 246 ASSGNSTAGPIRATFGYQSASSSECSSTSSSSASS 280


>AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical
           protein Y25C1A.3 protein.
          Length = 605

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 167 GERPATCCSSATNFSECSGTTRSSWSADSTASPGIR-ADSRSAAECCVXXXXXXXXXXGS 343
           G   +T    +T  +   G+T ++ +  STAS G+  A S + A  C           G 
Sbjct: 329 GSTASTAAGGSTASTAAGGSTATTAAGGSTASTGVTVASSPAPAAACEPGYKRFNRPSGP 388

Query: 344 YC 349
           +C
Sbjct: 389 WC 390


>AF025464-6|AAB71012.2|  376|Caenorhabditis elegans Hypothetical
           protein F53G2.2 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = -3

Query: 318 VLALTQHSAAERESARIPGDAVLSADHDDRVVPL-HSLKFVAELQHVAGRSPAQRAPLLA 142
           +L   Q + + R S R   D +  A++  +     H L +  EL+  A ++    +  L+
Sbjct: 8   LLVFAQCALSGRLSGRTQADCIAFANNIFKQQGFNHLLVYDKELEAYAAQTQCGTS-FLS 66

Query: 141 RFDTKAGHGGGKPTTKIIDEHTDILCFMTQALGLKF 34
               + GHGG   +  +  + T I C      GL+F
Sbjct: 67  MGLIELGHGGSYSSVNLRKDQTRIACAKKDCGGLQF 102


>Z66519-10|CAD59139.1|  446|Caenorhabditis elegans Hypothetical
           protein B0334.11b protein.
          Length = 446

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 22  LSFYKLQTQSLRHET*DISVFVNNFSGGFSA 114
           L + + QT S+ HE   I VF    SGGF A
Sbjct: 239 LKYIESQTISIFHEISIIEVFSETISGGFFA 269


>Z66519-9|CAA91380.1|  448|Caenorhabditis elegans Hypothetical
           protein B0334.11a protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 22  LSFYKLQTQSLRHET*DISVFVNNFSGGFSA 114
           L + + QT S+ HE   I VF    SGGF A
Sbjct: 241 LKYIESQTISIFHEISIIEVFSETISGGFFA 271


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 116 PCPALVSNL--ASSGARCAGERPATCCSSATNFSECSGTTRSSWSADSTASPGIRADSRS 289
           P P  VS    A++    AG   AT  + ++  ++ +  T S+ SAD+TA+    + S  
Sbjct: 295 PAPETVSAAPEAANSYDSAGGDAATAPAPSSEAADAAAPTDSAASADTTAALVDTSSSEH 354

Query: 290 AAE 298
           AAE
Sbjct: 355 AAE 357


>L16621-9|AAL11487.1|  568|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 282, isoform b protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 8   CHSKIYHFTNFRPKACVMKHRISVCSSIILVV 103
           CH  I  F +F P  C+ KH++++  S+ +++
Sbjct: 42  CHF-IDRFHSFNPLYCIEKHKMNIFISLAILI 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,248,002
Number of Sequences: 27780
Number of extensions: 169626
Number of successful extensions: 577
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)