Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0823
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly...    91   2e-19
At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / proly...    86   9e-18
At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam...    30   0.84 
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ...    29   1.1  
At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding protei...    28   2.6  
At1g69020.1 68414.m07897 prolyl oligopeptidase family protein si...    27   4.5  
At3g11600.1 68416.m01418 expressed protein weak similarity to B-...    27   5.9  
At2g32270.1 68415.m03944 zinc transporter (ZIP3) identical to zi...    27   7.8  

>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Mus
           musculus}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 38/70 (54%), Positives = 53/70 (75%), Gaps = 4/70 (5%)
 Frame = -1

Query: 452 DFYGAAVVQVGVLDIVRFQKFTIGHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRP 273
           D YG A+  VGV+D++RF KFTIGHAW SDYG S+N+ +F +L+KYSPLHN++ P E + 
Sbjct: 583 DLYGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSENEEEFHWLIKYSPLHNVKRPWEQQT 642

Query: 272 ----EYPATL 255
               +YP+T+
Sbjct: 643 DHLVQYPSTM 652



 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
 Frame = -3

Query: 267 PGDAVLSADHDDRVVPLHSLKFVAELQHVAGRS---PAQRAPLLARFDTKAGHGGGKPTT 97
           P   +L+ADHDDRVVPLHSLK +A LQHV   S     Q  P++ R + KAGHG G+PT 
Sbjct: 649 PSTMLLTADHDDRVVPLHSLKLLATLQHVLCTSLDNSPQMNPIIGRIEVKAGHGAGRPTQ 708

Query: 96  KIIDEHTDILCFMTQALGLKFVK 28
           K+IDE  D   FM + +   + +
Sbjct: 709 KMIDEAADRYSFMAKMVNASWTE 731


>At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|P48147 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Homo
           sapiens}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 86.2 bits (204), Expect = 9e-18
 Identities = 35/70 (50%), Positives = 52/70 (74%), Gaps = 4/70 (5%)
 Frame = -1

Query: 452 DFYGAAVVQVGVLDIVRFQKFTIGHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRP 273
           D +G A+  VGV+D++RF KFTIGHAW S++G SD + +F +L+KYSPLHN++ P E + 
Sbjct: 583 DLFGCALAHVGVMDMLRFHKFTIGHAWTSEFGCSDKEEEFHWLIKYSPLHNVKRPWEQKT 642

Query: 272 ----EYPATL 255
               +YP+T+
Sbjct: 643 DLFFQYPSTM 652



 Score = 79.8 bits (188), Expect = 8e-16
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
 Frame = -3

Query: 267 PGDAVLSADHDDRVVPLHSLKFVAELQHVAGRS---PAQRAPLLARFDTKAGHGGGKPTT 97
           P   +L+ADHDDRVVPLHS K +A +Q+  G S     Q  P++AR + KAGHG G+PT 
Sbjct: 649 PSTMLLTADHDDRVVPLHSYKLLATMQYELGLSLENSPQTNPIIARIEVKAGHGAGRPTQ 708

Query: 96  KIIDEHTDILCFMTQALGLKFV 31
           K+IDE  D   FM + +   ++
Sbjct: 709 KMIDEAADRYSFMAKMVDASWI 730


>At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam
           PF03467: Smg-4/UPF3 family; similar to hUPF3B
           (GI:12232324) [Homo sapiens]
          Length = 482

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -1

Query: 413 DIVRFQKFTIGHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENR 276
           D+  F  F  GH +V++ G+     QF+ +++Y+P   +  PS+ +
Sbjct: 65  DVYEFAAFFNGHVFVNEKGA-----QFKAIVEYAPSQRVPKPSDKK 105


>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
           DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
           [Arabidopsis thaliana]
          Length = 1576

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = +2

Query: 11  HSKIYHFTNFRPKACVMKHRISVCSSIILVVGFPPPCPALVSNLASSGARCAGERPATCC 190
           +SK  + T F+    + K RIS     +  V FPP   A++ +L +    C G+   T  
Sbjct: 106 YSKHRYETRFQKAGGIRKTRIS--PKKLKCVSFPPEAKAVLHDLFTRYPPCDGDTTGTSL 163

Query: 191 SSATNFSECSGTTRSSWSADSTASP 265
              T     +G   S+W  D    P
Sbjct: 164 GIYT-----TGNVNSNWKDDFFKKP 183


>At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding
           protein-related contains Pfam profile PF00026:
           Eukaryotic aspartyl protease;b similar to  CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 449

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 134 SNLASSGARCAGERPATCCSSATNFSECSGTTRSSWSADSTASPGIRADSRSAA 295
           S ++ S A+C   R  TC SS+   S CS     S+  DS+ S  +  D+ + A
Sbjct: 154 STVSCSTAQCTQARGLTCPSSSPQPSVCS--FNQSYGGDSSFSASLVQDTLTLA 205


>At1g69020.1 68414.m07897 prolyl oligopeptidase family protein
           similar to SP|Q59536 Protease II (EC 3.4.21.83)
           (Oligopeptidase B) {Moraxella lacunata}; contains Pfam
           profiles PF00326: prolyl oligopeptidase family, PF02897:
           Prolyl oligopeptidase, N-terminal beta-propeller domain;
           contains non-consensus GA donor splice site at intron 5
          Length = 757

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 365 DYGSSDNKTQFEYLLKYSPLHNIQ 294
           ++G+ DN+T F  +L YSP   I+
Sbjct: 651 EFGNPDNQTDFGSILSYSPYDKIR 674


>At3g11600.1 68416.m01418 expressed protein weak similarity to
           B-type cyclin (GI:849074) [Nicotiana tabacum]
          Length = 117

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 110 PPPCPALVSNLASSGARCAGERPATCCSSATNFSE 214
           PPP  A   +L  S  R     P++C SS TN  E
Sbjct: 19  PPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEE 53


>At2g32270.1 68415.m03944 zinc transporter (ZIP3) identical to zinc
           transporter [Arabidopsis thaliana]
           gi|3252870|gb|AAC24199; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 339

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 285 ARRLNVV*GRVLQQVLELGLIVRASVV 365
           + ++ ++  RV+ QVLELG+IV + V+
Sbjct: 175 SEKVQILRTRVIAQVLELGIIVHSVVI 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,659,580
Number of Sequences: 28952
Number of extensions: 154316
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)