Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0811
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.9  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   3.9  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   3.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.1  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 654 NFCLMT-SNSLFYLHFNDTKETNKT 583
           N C    +NS+   +FND+ E+N++
Sbjct: 402 NVCFRPRNNSILIKNFNDSPESNRS 426


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 2   MFLSYCHFINI 34
           M L YCH++NI
Sbjct: 194 MELQYCHYLNI 204


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 2   MFLSYCHFINI 34
           M L YCH++NI
Sbjct: 194 MELQYCHYLNI 204


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 418 FIIINIILESCSYYLL 371
           FIII +IL S  Y+++
Sbjct: 502 FIIIPVILTSVCYFMI 517


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,249
Number of Sequences: 336
Number of extensions: 2500
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)