Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0811
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039035-2|AAB94162.1|  304|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF039035-2|AAB94162.1|  304|Caenorhabditis elegans Hypothetical
           protein C53A3.1 protein.
          Length = 304

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +3

Query: 264 IKPLIRLFIRNLYSSYFEKLLTLVFNSEYLY*FVLISK**EQDSNIMLIMIKLRTLFKH 440
           I+P  RL I  + SS+F K LT  FN  YL  F L      +  N+   +I+LR    H
Sbjct: 235 IQPTHRLSIECMLSSHFNKELT--FNIPYLELFNLTQLGLHEVQNMNCELIRLRRAVHH 291


>Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical
           protein T08G11.4 protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -3

Query: 439 CLNKVRNFIIINIILESCSYYLLINTN**RYSELNTKVKSFSK*ELYKLRINKRIKGLII 260
           C N +  F +   I  + +Y+L  NT   +  EL TK K  S+ E+ +  +N +IK + +
Sbjct: 492 CPNGIDIFDVSLKICPNIAYFLPRNTKVSQLVELATKAK--SRMEIEQSALNSKIKTITV 549

Query: 259 RVAKILF 239
              K+ +
Sbjct: 550 YYGKLAY 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,591,533
Number of Sequences: 27780
Number of extensions: 203134
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)