Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0811
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.86 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.0  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 89  FLHNSVLNSVLQDFIGCTYL 148
           F+H S+ N +L DF  CT++
Sbjct: 105 FVHESLKNVLLWDFQECTFI 124


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 126 SCKTEFKTELCKNLSSFSNSVFKHQVLE 43
           S   EF  EL K LSS +   F H VL+
Sbjct: 868 STLVEFALELKKALSSINEQSFNHFVLK 895


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 217 LT*KYCFSQKTVSNYKNYCINI 152
           L+  Y +S    +NYK  C NI
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNI 106


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 217 LT*KYCFSQKTVSNYKNYCINI 152
           L+  Y +S    +NYK  C NI
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNI 106


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 217 LT*KYCFSQKTVSNYKNYCINI 152
           L+  Y +S    +NYK  C NI
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNI 106


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 217 LT*KYCFSQKTVSNYKNYCINI 152
           L+  Y +S    +NYK  C NI
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNI 106


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 217 LT*KYCFSQKTVSNYKNYCINI 152
           L+  Y +S    +NYK  C NI
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNI 106


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 217 LT*KYCFSQKTVSNYKNYCINI 152
           L+  Y +S    +NYK  C NI
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNI 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,668
Number of Sequences: 438
Number of extensions: 3013
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)