Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0792
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    42   1e-04
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    31   0.18 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   3.0  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   5.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   6.9  
SPAC17G8.09 |shg1||Csp15 family protein|Schizosaccharomyces pomb...    26   6.9  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 134 DPEHHPDPEKFDPDRFLDENKHKIKPFTFLPFGAGPRNCIGSRF 3
           D + +P+PE F+PDR+      +  P  ++ FG GP  C+G R+
Sbjct: 421 DSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRY 464


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -1

Query: 502 RKWTQDELTAQVFIFFLAGFESSANGLTLCIHELALNPEAQEKLYEAIIKFKEEKGPLTY 323
           R   + E+   +    +AG  +SA  +   +  L   PE  E L+E   +   E   L +
Sbjct: 271 RPLKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKF 330

Query: 322 DNIGELKYLDCVLNETSR 269
           D   ++  L+ V+ ET R
Sbjct: 331 DQYKDMPLLNYVIQETLR 348



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 50  FLPFGAGPRNCIGSRF 3
           +LPFGAG   CIG +F
Sbjct: 432 YLPFGAGRHRCIGEQF 447


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 481  LTAQVFIFFLAGFESSANGLTLCIHELALN 392
            L  Q+F F+L GFE     L +C   L  N
Sbjct: 921  LIIQLFTFYLIGFEEEGKMLAVCFSCLIFN 950


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 708 FPQKVTRFFREIVTSTMDYRLKNNVERPDM--IQLLMDAYKGTLK 580
           FP+KV +F+   V   +DY   N +   D+    LL+D + G LK
Sbjct: 296 FPEKVAKFYAAEVILALDYLHHNQIVYRDLKPENLLLDRF-GHLK 339


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 145 PSKWIPSIILTLRSLTRTDSWMKISTKSNRLLSCHLVLD 29
           P++WIP+   T+R + R D +   ++ S R  +  L LD
Sbjct: 401 PTRWIPTANRTIRCIRRGD-FQTAASSSKRNCTYFLTLD 438


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 486 SWVHFLTFPLVLTSLLS*QNLHF 554
           S+ +F+TFPL++T L   + L+F
Sbjct: 533 SYNNFVTFPLIITELSQLETLNF 555


>SPAC17G8.09 |shg1||Csp15 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 170 DIVYNSVNSIQMDPEHHPDPEKFDPDRFLDENK 72
           +++YNS+  I ++   H D EK    + +D  K
Sbjct: 96  EVIYNSLEQIGIEQIEHEDEEKLLNSKTMDGRK 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,859
Number of Sequences: 5004
Number of extensions: 70034
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)