Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0781
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 8e-42
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 4e-41
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 1e-40
SB_56| Best HMM Match : Actin (HMM E-Value=0) 163 1e-40
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 162 1e-40
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 4e-40
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 143 7e-35
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 54 9e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 50 1e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_20153| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 3.0
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.0
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07) 27 6.9
SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4) 27 9.1
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 27 9.1
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 166 bits (404), Expect = 8e-42
Identities = 76/81 (93%), Positives = 80/81 (98%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
ANTVMSGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 269 ANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 328
Query: 326 MWISKEEYDESGPGIVHRKCF 264
MWISK+EYDESGP IVHRKCF
Sbjct: 329 MWISKQEYDESGPAIVHRKCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 164 bits (398), Expect = 4e-41
Identities = 75/81 (92%), Positives = 79/81 (97%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
ANTV+SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 258 ANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 317
Query: 326 MWISKEEYDESGPGIVHRKCF 264
MWISK+EYDESGP IVHRKCF
Sbjct: 318 MWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 163 bits (395), Expect = 1e-40
Identities = 74/81 (91%), Positives = 79/81 (97%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
ANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 296 ANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 355
Query: 326 MWISKEEYDESGPGIVHRKCF 264
MWISK+EYDESGP IVHRKCF
Sbjct: 356 MWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 163 bits (395), Expect = 1e-40
Identities = 74/81 (91%), Positives = 79/81 (97%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
ANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 295 ANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 354
Query: 326 MWISKEEYDESGPGIVHRKCF 264
MWISK+EYDESGP IVHRKCF
Sbjct: 355 MWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 162 bits (394), Expect = 1e-40
Identities = 74/81 (91%), Positives = 79/81 (97%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
ANTV+SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 296 ANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 355
Query: 326 MWISKEEYDESGPGIVHRKCF 264
MWISK+EYDESGP IVHRKCF
Sbjct: 356 MWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 161 bits (390), Expect = 4e-40
Identities = 73/81 (90%), Positives = 79/81 (97%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
ANTV+SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 295 ANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 354
Query: 326 MWISKEEYDESGPGIVHRKCF 264
MWISK+EYDESGP IVHRKCF
Sbjct: 355 MWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 143 bits (347), Expect = 7e-35
Identities = 64/81 (79%), Positives = 74/81 (91%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
+N V+SGG+TM+PGIADRMQKEI LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 69 SNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQ 128
Query: 326 MWISKEEYDESGPGIVHRKCF 264
MWI+KEEY E GP IVHRKCF
Sbjct: 129 MWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 53.6 bits (123), Expect = 9e-08
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITA----------------LAPSTIKIKIIAPPERKYSV 372
N V+SGG+TM+ R+Q++I + P I+ ++I+ ++Y+V
Sbjct: 245 NIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAV 304
Query: 371 WIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 264
W GGS+LAS F + +K +YDE GP I F
Sbjct: 305 WFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/57 (35%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIA---PPERKYSVWIGGSILASL 342
+ +++GG T+ G +R+ +E+ + P ++++K+I+ E++++ WIGGSILASL
Sbjct: 174 SVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -3
Query: 413 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 291
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPST-------IK-IKIIAPP-ERKYSVWIGGSIL 351
N V+ GGT M PG R+ +EI L S IK +K+ PP + W+GG+I
Sbjct: 80 NIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIF 139
Query: 350 ASLSTFQQMWISKEEYDE 297
SL ++E Y +
Sbjct: 140 GSLEVLADRSTTRERYQQ 157
>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 30.3 bits (65), Expect = 0.97
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 509 DANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 387
DAN V+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 43 DANPVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84
>SB_20153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 509 DANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 387
DAN V+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 43 DANPVIHPARKVPVSLGERLDKELNHLTELGIVKEKIIAPPE 84
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 465 YRRQDAEGDHRPRALDHQDQDHRSPREE 382
+RRQDA DHR + DH QD PR++
Sbjct: 664 HRRQDA--DHRRQDADHHRQDVVHPRQD 689
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 355 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 492
+DPP+ +Y L+GG ++ ++ FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAP 423
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
Length = 423
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 156 RCSVLRYH*VQRTDGCVQNSDEHNTTQHRGHAARCLEALAVDDAGAGLV 302
R V+ H VQR + ++ +E QHR H +E +D G +
Sbjct: 115 RMKVINSHKVQRMEQAKKHKEEIEKNQHRPHHIPIVEKTNEEDKEVGRI 163
>SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)
Length = 126
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 462 RRQDAEGDHRPRALDHQDQDHRSPREEVLRMDRWIHPGFP 343
RRQ HR R D +D+D R L DR+ + +P
Sbjct: 4 RRQGTATIHRYRQSDLRDRDRRRVLPRFLEQDRFDNSDYP 43
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 169 SGITRYNVLTVAFRTRTSTTPHSTGVT 249
+GIT N++T A T TSTT + VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,837,499
Number of Sequences: 59808
Number of extensions: 281143
Number of successful extensions: 913
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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