Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0781
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 155 2e-38
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 155 2e-38
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 155 2e-38
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 155 2e-38
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 154 3e-38
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 154 3e-38
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 150 6e-37
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 150 6e-37
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 139 1e-33
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 132 1e-31
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 120 4e-28
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 110 5e-25
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 86 2e-17
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 78 3e-15
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 64 7e-11
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 59 2e-09
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 48 3e-06
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 47 6e-06
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 40 7e-04
At5g43500.2 68418.m05318 expressed protein 30 0.80
At5g43500.1 68418.m05319 expressed protein 30 0.80
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 29 2.4
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ... 27 5.6
At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family... 27 7.4
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family... 27 7.4
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 27 9.8
At3g50690.1 68416.m05546 leucine-rich repeat family protein 27 9.8
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 155 bits (376), Expect = 2e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGG+TM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 323 WISKEEYDESGPGIVHRKCF 264
WISK EYDESGP IVHRKCF
Sbjct: 358 WISKSEYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 155 bits (376), Expect = 2e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 323 WISKEEYDESGPGIVHRKCF 264
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 155 bits (376), Expect = 2e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 323 WISKEEYDESGPGIVHRKCF 264
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 155 bits (376), Expect = 2e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 323 WISKEEYDESGPGIVHRKCF 264
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 154 bits (374), Expect = 3e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+ GIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 323 WISKEEYDESGPGIVHRKCF 264
WISK EYDE+GPGIVHRKCF
Sbjct: 358 WISKAEYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 154 bits (374), Expect = 3e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+ GIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 323 WISKEEYDESGPGIVHRKCF 264
WISK EYDE+GPGIVHRKCF
Sbjct: 358 WISKAEYDEAGPGIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 150 bits (363), Expect = 6e-37
Identities = 67/80 (83%), Positives = 74/80 (92%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+ GI DRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 323 WISKEEYDESGPGIVHRKCF 264
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 150 bits (363), Expect = 6e-37
Identities = 67/80 (83%), Positives = 74/80 (92%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+ GI DRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 323 WISKEEYDESGPGIVHRKCF 264
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 139 bits (336), Expect = 1e-33
Identities = 61/80 (76%), Positives = 70/80 (87%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+PGIADRM KEI ALAP ++KIK++APPERKYSVW+GGSILASLS+F M
Sbjct: 299 NIVLSGGTTMFPGIADRMNKEINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPM 358
Query: 323 WISKEEYDESGPGIVHRKCF 264
WI+K EYDE G IVHRKCF
Sbjct: 359 WITKAEYDEQGGAIVHRKCF 378
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 132 bits (319), Expect = 1e-31
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+ GI +RM KEI ALA + ++IKI+APPERKYSVWIGGSILASLST++QM
Sbjct: 250 NIVLSGGTTMFRGIEERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILASLSTYEQM 309
Query: 323 WISKEEYDESGPGIVHRKCF 264
WI+K EY+E+GP IVH KCF
Sbjct: 310 WITKAEYEENGPAIVHTKCF 329
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 120 bits (290), Expect = 4e-28
Identities = 52/79 (65%), Positives = 65/79 (82%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N +M+GGTTM GI +RM KE+ AL PS++K+K++ PPE + SVWIGGSILASLSTF QM
Sbjct: 287 NILMTGGTTMLHGIKERMTKELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQM 346
Query: 323 WISKEEYDESGPGIVHRKC 267
WI+K+EY+E G IVHRKC
Sbjct: 347 WITKDEYEEHGAAIVHRKC 365
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 110 bits (265), Expect = 5e-25
Identities = 51/64 (79%), Positives = 59/64 (92%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V+SGGTTM+ GIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQ+
Sbjct: 298 NIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQV 357
Query: 323 WISK 312
I +
Sbjct: 358 KIDQ 361
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/83 (43%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP---PERKYSVWIGGSILASLST 336
++ +++GGT+ + +R++K++ +P + ++K++A ER++SVWIGGSILASL +
Sbjct: 358 SSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGS 417
Query: 335 FQQMWISKEEYDESGPGIVHRKC 267
FQQMW SK EY+E G + RKC
Sbjct: 418 FQQMWFSKSEYEEHGASYIQRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 78.2 bits (184), Expect = 3e-15
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK------YSVWIGGSILASL 342
NTV+ GGTT G R QKE L S I+ ++ PPE YS W+GG+ILA +
Sbjct: 279 NTVLCGGTTSMTGFESRFQKEAN-LCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKV 337
Query: 341 STFQQMWISKEEYDESGPGIVHRKCF 264
Q ++K +YDE+GP +VHRKCF
Sbjct: 338 VFPQNQHVTKADYDETGPSVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 63.7 bits (148), Expect = 7e-11
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = -3
Query: 497 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 318
+++GG+T++P + +R++ E+ L P +KI + VW GGS+LAS F+ M +
Sbjct: 343 ILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCV 402
Query: 317 SKEEYDESGPGIVHRKCF 264
+K EY+E G R+ F
Sbjct: 403 TKAEYEELGSARCRRRFF 420
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Frame = -3
Query: 497 VMSGGTTMYPGIADRMQKEI------TALAPS-----TIKIKIIAPPERKYSVWIGGSIL 351
V+SGG+TMYPG+ R++KEI T L + ++++I PP RK+ V++GG++L
Sbjct: 299 VLSGGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVL 358
Query: 350 AS-LSTFQQMWISKEEYDESG 291
A + + WI++E+Y E G
Sbjct: 359 AGIMKDAPEFWINREDYMEEG 379
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Frame = -3
Query: 503 NTVMSGGTTMYPGIADRMQKEITALAPSTI----------------KIKIIAPPERKYSV 372
N V+SGG+TM+ R+Q+++ + + + ++ +++ P ++++V
Sbjct: 327 NIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQRFAV 386
Query: 371 WIGGSILASLSTFQQMWISKEEYDESGPGI 282
W GGS+L+S F +KEEY+E G I
Sbjct: 387 WFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 47.2 bits (107), Expect = 6e-06
Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Frame = -3
Query: 497 VMSGGTTMYPGIADRMQKEITALAPSTIK--IKIIAPPERKYSVWIGGSILASLSTFQQM 324
V++GG+ PG+++R+++E+ PS+I I++I PP + W G ++++LS F
Sbjct: 396 VLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGP 455
Query: 323 W-ISKEEY 303
W I+++++
Sbjct: 456 WCITRKQF 463
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 40.3 bits (90), Expect = 7e-04
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -3
Query: 506 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
++ +M+GG ++ PG+ +R++ I + P I ++ + W G S A+ F
Sbjct: 639 SSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLNFLG 698
Query: 326 MWISKEEYDESG 291
+K +YDE G
Sbjct: 699 NAFTKMDYDEKG 710
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 30.3 bits (65), Expect = 0.80
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -3
Query: 488 GGTTMYPGIADRMQKEITALAPSTIKIKII----APPERKYSVWIGGSILASLSTFQQMW 321
GG + G+ +++ + P T I + + E ++ W GG+IL L ++ W
Sbjct: 490 GGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAW 549
Query: 320 ISKEEYDESG 291
I + ++ +G
Sbjct: 550 IERHQWMVNG 559
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 30.3 bits (65), Expect = 0.80
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -3
Query: 488 GGTTMYPGIADRMQKEITALAPSTIKIKII----APPERKYSVWIGGSILASLSTFQQMW 321
GG + G+ +++ + P T I + + E ++ W GG+IL L ++ W
Sbjct: 502 GGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAW 561
Query: 320 ISKEEYDESG 291
I + ++ +G
Sbjct: 562 IERHQWMVNG 571
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 181 RYNVLTVAFRTRTSTTPHSTGVTRPAA*KHLRWTMPGPDSSYSSFEIHICWKVD-REARM 357
R ++++ + R +T+ G R A + RWT PG +S F + +D RE +
Sbjct: 1007 RQSIISNSNLHRLTTSRKLQGYIRNGAFEPRRWTAPG---QFSLFPVPCKCGIDTREVPL 1063
Query: 358 DPPIHTE 378
DP TE
Sbjct: 1064 DPKFFTE 1070
>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 607
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 453 DAEGDHRPRALDHQDQDHRSPREEVLRMDRWIHPGFPV 340
D E +P+AL H S ++ LR W+ P FP+
Sbjct: 423 DNEHYRKPKALVSDKTRHESEYKKGLRPVLWLSPNFPL 460
>At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family
protein similar to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 515
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 497 VMSGGTTMYPGIADRMQKEITALAPSTIKIKII 399
+ G + +Y G+ D QK I + T+ KI+
Sbjct: 209 INGGASWLYQGVVDAFQKMIISTVEKTVSTKIV 241
>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
protein similar to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 722
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 497 VMSGGTTMYPGIADRMQKEITALAPSTIKIKII 399
+ G + +Y G+ D QK I + T+ KI+
Sbjct: 416 INGGASWLYQGVVDAFQKMIISTVEKTVSTKIV 448
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -3
Query: 443 EITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDE 297
EI+ L P + +KI+A K V I S+L+ F MW+ K +YD+
Sbjct: 3 EISGL-PDDLLVKILAFLPTK--VAISTSVLSKQWRFLWMWLPKLKYDD 48
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 459 RQDAEGDHRPRALDHQDQDHRSPREE 382
+ DAEG+ RP + D D++ EE
Sbjct: 153 KTDAEGNERPESDDEDDEEDEEDEEE 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,530,647
Number of Sequences: 28952
Number of extensions: 183543
Number of successful extensions: 547
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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